Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.2e-64 248.1 142 100.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.0e-41 173.7 144 81.2
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 9.8e-21 104.0 57 82.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 3.1e-19 99.0 50 86.0
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 3.1e-19 99.0 50 88.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 4.1e-19 98.6 50 88.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 5.4e-19 98.2 63 73.0
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 5.4e-19 98.2 63 73.0
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 5.4e-19 98.2 63 73.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 7.0e-19 97.8 60 75.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 7.0e-19 97.8 53 83.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.1e-19 97.4 50 84.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.2e-18 97.1 100 55.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.0e-18 96.3 91 61.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.7e-18 95.9 53 79.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.5e-18 95.5 54 87.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 5.9e-18 94.7 118 46.6
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 7.7e-18 94.4 87 75.9
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.3e-17 93.6 113 49.6
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.7e-17 93.2 50 86.0
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.8e-17 92.0 57 77.2
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.5e-17 91.3 110 50.0
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.5e-17 91.3 50 80.0
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 6.5e-17 91.3 50 80.0
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.6e-17 90.9 50 80.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 8.6e-17 90.9 120 47.5
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 8.6e-17 90.9 44 90.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.5e-16 90.1 54 75.9
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.9e-16 89.7 53 77.4
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 4.2e-16 88.6 50 82.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.5e-16 88.2 126 45.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.5e-16 88.2 49 77.6
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 7.2e-16 87.8 50 78.0
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 9.5e-16 87.4 49 77.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 9.5e-16 87.4 44 84.1
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.2e-15 87.0 102 49.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 6.1e-15 84.7 85 72.9
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-14 83.6 50 76.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-14 83.6 75 77.3
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.4e-14 83.6 104 61.5
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.8e-14 83.2 77 76.6
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 2.3e-14 82.8 40 90.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.0e-14 82.4 59 66.1
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.0e-14 82.0 50 74.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.0e-14 82.0 50 74.0
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.0e-14 82.0 50 74.0
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.2e-14 81.6 79 73.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 8.9e-14 80.9 99 50.5
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.2e-13 80.5 50 72.0
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.2e-13 80.5 50 74.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.2e-13 80.5 50 76.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.4e-13 79.0 50 72.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.4e-13 78.6 50 72.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.7e-13 78.2 50 72.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.5e-13 77.8 111 45.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.5e-13 77.8 39 84.6
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 9.8e-13 77.4 75 72.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.7e-12 76.6 67 58.2
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.7e-12 76.6 38 84.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.7e-12 75.5 90 50.0
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.7e-12 75.5 36 88.9
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.7e-12 75.5 120 52.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.7e-12 75.5 47 72.3
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 4.9e-12 75.1 50 72.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 4.9e-12 75.1 93 52.7
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.3e-12 74.7 36 88.9
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 6.3e-12 74.7 83 50.6
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 8.3e-12 74.3 35 91.4
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-11 73.9 45 68.9
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-11 73.9 45 75.6
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.1e-11 73.9 36 86.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.1e-11 73.9 36 86.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.1e-11 73.9 36 86.1
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.4e-11 73.6 50 70.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.4e-11 73.6 50 70.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.4e-11 73.6 44 75.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.4e-11 73.6 35 91.4
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 3.1e-11 72.4 36 83.3
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.1e-11 72.4 36 83.3
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.1e-11 72.4 36 83.3
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.1e-11 72.4 40 80.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 3.1e-11 72.4 36 83.3
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.1e-11 72.0 36 83.3
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.1e-11 72.0 35 85.7
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 4.1e-11 72.0 76 68.4
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 7.0e-11 71.2 85 62.4
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.2e-10 70.5 77 64.9
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.6e-10 70.1 33 90.9
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.6e-10 70.1 50 64.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.6e-10 70.1 35 82.9
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.0e-10 69.7 34 85.3
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 2.0e-10 69.7 86 47.7
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.7e-10 69.3 38 76.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 2.7e-10 69.3 38 76.3
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 2.7e-10 69.3 34 82.4
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 2.7e-10 69.3 32 93.8
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.7e-10 69.3 61 54.1
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 3.5e-10 68.9 56 58.9
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 4.5e-10 68.6 33 87.9
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 4.5e-10 68.6 33 87.9
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.5e-10 68.6 77 70.1
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 5.9e-10 68.2 34 82.4
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 5.9e-10 68.2 34 82.4
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 7.8e-10 67.8 32 90.6
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.7e-09 66.6 32 84.4
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.7e-09 66.6 50 60.0
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.7e-09 66.6 79 60.8
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.9e-09 65.9 129 47.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.9e-09 65.9 103 41.7
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 5.0e-09 65.1 79 59.5
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 8.6e-09 64.3 32 81.2
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 8.6e-09 64.3 136 44.9
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 8.6e-09 64.3 32 81.2
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.9e-08 63.2 41 68.3
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.5e-08 62.8 94 56.4
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.3e-08 62.4 33 72.7
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.3e-08 62.0 49 59.2
Oeu033500.1 Olea europaea HOM05D005853 ORTHO05D007308 8.9e-06 54.3 59 74.6


User provided reference genes

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