Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.6e-186 654.4 335 100.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 3.9e-129 465.3 324 75.0
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.6e-128 462.6 315 76.8
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.3e-128 462.2 292 78.8
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 3.1e-126 455.7 308 73.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.3e-124 450.3 302 73.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 8.5e-124 447.6 302 75.2
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.4e-123 446.8 303 72.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 7.2e-123 444.5 277 78.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.2e-122 443.7 298 73.2
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.2e-122 443.7 266 79.7
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.7e-122 442.6 275 78.2
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 4.7e-122 441.8 290 75.5
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 6.1e-122 441.4 292 74.3
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.0e-121 440.7 291 74.9
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.0e-121 440.7 302 74.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.4e-121 440.3 295 74.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.4e-121 440.3 270 81.5
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.0e-121 439.1 300 75.0
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.0e-121 439.1 294 73.5
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.0e-121 439.1 289 75.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 3.9e-121 438.7 275 77.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.2e-121 438.3 289 75.4
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 6.7e-121 438.0 277 79.1
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 6.7e-121 438.0 289 74.7
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 8.8e-121 437.6 264 82.2
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.1e-120 437.2 264 81.1
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.3e-120 435.6 275 78.5
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 3.3e-120 435.6 275 78.5
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.4e-120 435.3 285 76.8
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 5.7e-120 434.9 273 78.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 7.4e-120 434.5 275 78.2
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 9.7e-120 434.1 270 78.5
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-119 433.7 267 79.0
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.3e-119 433.7 264 79.2
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.3e-119 433.7 292 75.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.7e-119 433.3 303 73.9
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.2e-119 433.0 270 78.5
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.2e-119 433.0 270 78.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.8e-119 432.6 268 79.1
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.7e-119 432.2 267 79.0
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 6.3e-119 431.4 267 79.4
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 6.3e-119 431.4 325 70.5
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 8.2e-119 431.0 267 79.8
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.4e-118 430.3 295 75.3
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.8e-118 429.9 264 80.3
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.8e-118 429.9 267 79.4
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.8e-118 429.9 267 78.7
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.8e-118 429.9 268 78.7
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.4e-118 429.5 267 79.4
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.4e-118 429.5 267 79.4
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 2.4e-118 429.5 282 74.1
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.4e-118 429.5 322 69.9
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.4e-118 429.5 267 79.0
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 2.4e-118 429.5 267 79.0
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.4e-118 429.5 271 79.3
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.1e-118 429.1 293 74.4
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 4.1e-118 428.7 274 76.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 5.3e-118 428.3 267 79.0
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 7.0e-118 427.9 272 79.8
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 7.0e-118 427.9 283 74.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 9.1e-118 427.6 324 69.1
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 9.1e-118 427.6 277 76.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.1e-118 427.6 283 74.2
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 9.1e-118 427.6 267 79.0
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.6e-117 426.8 263 79.8
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.6e-117 426.8 261 80.1
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.6e-117 426.8 287 74.2
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.6e-117 426.8 301 71.4
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.6e-117 426.8 264 78.8
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.6e-117 426.8 283 75.3
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.0e-117 426.4 283 75.3
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-117 426.4 283 75.3
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-117 426.4 283 75.3
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.0e-117 426.4 283 75.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 2.0e-117 426.4 266 79.7
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.6e-117 426.0 283 75.3
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.6e-117 426.0 283 75.3
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.6e-117 426.0 283 75.3
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.6e-117 426.0 283 75.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.6e-117 426.0 283 75.3
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.6e-117 426.0 267 77.2
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 2.6e-117 426.0 270 76.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 2.6e-117 426.0 264 78.4
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 3.5e-117 425.6 271 76.0
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.5e-117 425.6 282 74.8
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 3.5e-117 425.6 267 77.5
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 4.5e-117 425.2 282 75.5
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 4.5e-117 425.2 283 74.9
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 4.5e-117 425.2 267 78.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 4.5e-117 425.2 292 72.9
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 5.9e-117 424.9 282 75.2
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.9e-117 424.9 283 73.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.9e-117 424.9 283 73.9
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.9e-117 424.9 283 73.9
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 7.7e-117 424.5 283 74.9
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 7.7e-117 424.5 270 75.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.0e-116 424.1 283 75.3
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.7e-116 423.3 320 69.7
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.7e-116 423.3 293 71.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.7e-116 423.3 293 71.7
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.2e-116 422.9 293 72.0
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.9e-116 422.5 267 77.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 2.9e-116 422.5 274 76.6
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.8e-116 422.2 273 75.5
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 3.8e-116 422.2 275 74.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 5.0e-116 421.8 308 69.8
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.5e-116 421.4 268 76.1
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.5e-116 421.4 256 78.9
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-115 420.2 259 78.0
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.9e-115 419.9 298 72.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.9e-115 419.9 267 77.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.5e-115 419.5 277 74.7
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.5e-115 419.5 277 74.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 3.2e-115 419.1 293 72.0
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 5.5e-115 418.3 279 73.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.5e-115 418.3 298 70.5
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.4e-115 417.5 267 77.5
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.2e-114 417.2 270 75.9
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.7e-114 416.0 267 76.4
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.7e-114 416.0 267 77.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.7e-114 416.0 298 70.5
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 3.6e-114 415.6 268 76.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 3.6e-114 415.6 282 73.0
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 3.6e-114 415.6 324 69.1
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 4.7e-114 415.2 267 77.2
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-113 413.7 267 76.8
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.4e-113 413.7 271 74.5
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.7e-113 411.4 267 76.8
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 6.7e-113 411.4 313 68.7
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.6e-112 409.5 267 76.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 5.7e-112 408.3 266 74.4
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.3e-111 407.1 269 75.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 8.2e-111 404.4 271 74.5
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.1e-110 404.1 260 76.2
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.5e-109 398.7 299 66.9
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.7e-108 396.7 264 73.1
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 5.0e-108 395.2 264 72.0
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.2e-107 391.3 306 67.3
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 7.0e-102 374.8 267 67.4
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.0e-100 370.9 267 70.0
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.3e-97 359.8 270 67.8
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 3.0e-97 359.4 260 71.5
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 5.2e-97 358.6 266 66.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.2e-93 347.4 221 79.6
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 1.9e-91 340.1 220 76.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.9e-91 340.1 227 75.8
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 9.2e-86 321.2 279 60.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.6e-82 309.3 302 55.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.4e-81 307.4 220 72.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.8e-81 307.0 215 69.8
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.2e-81 305.4 229 67.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 8.3e-79 298.1 225 68.9
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.6e-64 250.0 151 76.8
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 3.0e-60 236.5 259 48.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.3e-59 231.9 207 58.9
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.3e-59 231.9 205 59.0
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 4.7e-58 229.2 221 61.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.5e-53 213.0 141 74.5
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.9e-51 207.2 237 51.1
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-40 170.6 142 65.5
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.4e-40 169.9 104 78.8
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 5.5e-38 162.5 99 80.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.5e-35 154.5 99 75.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 9.6e-35 151.8 220 49.5
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 9.0e-25 118.6 65 90.8
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 5.9e-24 115.9 78 75.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.2e-22 110.2 65 81.5
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 4.6e-21 106.3 60 86.7
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-19 101.7 65 78.5
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.7e-19 98.6 252 33.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.7e-18 97.8 63 77.8
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.7e-18 97.8 63 77.8
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 5.3e-17 92.8 97 56.7
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.9e-17 92.4 90 56.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.2e-15 87.4 74 63.5
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 3.0e-12 77.0 50 72.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 5.1e-12 76.3 45 75.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 3.3e-11 73.6 47 76.6
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.9e-06 57.8 28 78.6


User provided reference genes

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