Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.5e-45 184.1 86 100.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 6.1e-34 147.1 74 87.8
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.8e-33 145.6 81 81.5
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 2.3e-33 145.2 84 71.4
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.2e-33 144.1 84 70.2
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.5e-32 142.5 75 77.3
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.5e-32 142.5 84 73.8
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.0e-32 142.1 84 69.0
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.6e-32 141.7 84 70.2
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.4e-32 141.0 84 69.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 4.4e-32 141.0 83 72.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.4e-32 141.0 83 72.3
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 83 71.1
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 83 71.1
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 83 71.1
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 69.0
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 2.2e-31 138.7 84 69.0
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 74 75.7
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 74 75.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 75 74.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 6.3e-31 137.1 84 69.0
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 6.3e-31 137.1 75 76.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.3e-31 137.1 83 66.3
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 8.2e-31 136.7 84 66.7
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 8.2e-31 136.7 84 66.7
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-30 136.3 80 75.0
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-30 136.3 80 75.0
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-30 136.3 80 75.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.1e-30 136.3 75 73.3
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.4e-30 136.0 84 66.7
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.4e-30 136.0 84 69.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 71.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 71.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.4e-30 135.2 74 75.7
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 3.1e-30 134.8 84 66.7
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.3e-30 134.0 84 66.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 9.1e-30 133.3 74 74.3
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 9.1e-30 133.3 75 72.0
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.2e-29 132.9 84 66.7
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.2e-29 132.9 86 68.6
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.6e-29 132.5 85 69.4
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.0e-29 132.1 72 73.6
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.0e-29 132.1 75 69.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 2.6e-29 131.7 84 64.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 4.5e-29 131.0 84 65.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 4.5e-29 131.0 72 72.2
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 5.9e-29 130.6 75 72.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 5.9e-29 130.6 74 73.0
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.7e-29 130.2 72 76.4
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.0e-28 129.8 85 69.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.0e-28 129.8 75 72.0
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.3e-28 129.4 83 65.1
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 72.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 72.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 70.7
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 70.7
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 3.8e-28 127.9 73 72.6
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 5.0e-28 127.5 75 66.7
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 6.5e-28 127.1 74 71.6
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 6.5e-28 127.1 85 62.4
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 8.5e-28 126.7 76 68.4
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.5e-27 125.9 85 62.4
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.5e-27 125.9 85 62.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.9e-27 125.6 74 70.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.9e-27 125.6 76 69.7
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-27 125.6 85 62.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-27 125.6 85 62.4
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.9e-27 125.6 73 68.5
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.5e-27 125.2 83 62.7
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.5e-27 125.2 75 69.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 3.2e-27 124.8 74 70.3
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.2e-27 124.8 73 69.9
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.2e-27 124.8 73 69.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.2e-27 124.8 84 61.9
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.5e-27 124.0 85 61.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.5e-27 124.0 77 66.2
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 7.2e-27 123.6 76 67.1
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 7.2e-27 123.6 84 60.7
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 7.2e-27 123.6 84 65.5
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 7.2e-27 123.6 73 68.5
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.2e-26 122.9 83 69.9
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.6e-26 122.5 70 68.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 84 65.5
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 84 65.5
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.1e-26 122.1 84 63.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.7e-26 121.7 81 63.0
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 3.6e-26 121.3 84 61.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.7e-26 120.9 83 62.7
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 6.1e-26 120.6 83 61.4
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.1e-26 120.6 84 64.3
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.4e-25 119.4 67 71.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.4e-25 119.4 75 62.7
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.8e-25 119.0 83 60.2
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.3e-25 118.6 87 59.8
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.3e-25 118.6 83 59.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.0e-25 118.2 75 68.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.0e-25 117.9 75 64.0
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.0e-25 117.9 75 64.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 4.0e-25 117.9 75 64.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 5.2e-25 117.5 83 60.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 6.7e-25 117.1 65 73.8
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 6.7e-25 117.1 62 75.8
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 6.7e-25 117.1 75 61.3
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.7e-25 117.1 68 70.6
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.5e-24 115.9 84 59.5
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.0e-24 115.5 84 59.5
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 2.0e-24 115.5 75 64.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 2.6e-24 115.2 68 69.1
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 2.6e-24 115.2 68 69.1
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.6e-24 115.2 67 67.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 3.3e-24 114.8 75 64.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 3.3e-24 114.8 88 59.1
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 4.4e-24 114.4 70 70.0
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 7.5e-24 113.6 104 51.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 9.7e-24 113.2 85 57.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.3e-23 112.8 72 61.1
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.3e-23 112.8 85 56.5
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.3e-23 112.8 71 67.6
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.3e-23 112.8 68 67.6
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 85 57.6
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 2.2e-23 112.1 77 61.0
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.8e-23 111.7 59 81.4
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 3.7e-23 111.3 84 63.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 4.8e-23 110.9 85 60.0
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 4.8e-23 110.9 66 69.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 4.8e-23 110.9 84 57.1
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 8.3e-23 110.2 85 56.5
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.1e-22 108.2 69 59.4
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 5.3e-22 107.5 75 58.7
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.2e-21 106.3 58 75.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 82 53.7
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 8.5e-20 100.1 71 60.6
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-19 99.8 84 54.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.5e-19 99.4 71 59.2
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.5e-19 98.6 75 57.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 3.2e-19 98.2 60 63.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 4.2e-19 97.8 52 78.8
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 4.2e-19 97.8 53 69.8
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 5.5e-19 97.4 67 61.2
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 7.2e-19 97.1 52 71.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 7.2e-19 97.1 54 66.7
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 9.4e-19 96.7 56 71.4
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-18 95.9 85 52.9
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.1e-18 95.5 64 62.5
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 4.7e-18 94.4 74 54.1
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 8.0e-18 93.6 57 64.9
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.8e-17 90.5 57 66.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 7.5e-16 87.0 93 46.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.4e-14 82.8 71 53.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.4e-14 82.8 62 59.7
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.8e-14 82.4 101 41.6
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 1.3e-12 76.3 39 74.4
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.8e-12 74.7 59 54.2
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 5.0e-12 74.3 51 64.7
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 2.5e-11 72.0 57 52.6
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 5.2e-09 64.3 46 58.7
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 6.8e-09 63.9 62 45.2
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 8.9e-09 63.5 55 54.5
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 4.1e-06 54.7 46 45.7


User provided reference genes

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