Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.9e-166 587.0 296 100.0
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 9.1e-146 520.4 289 88.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 7.3e-95 351.3 290 59.0
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 2.7e-89 332.8 289 55.7
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 6.0e-89 331.6 280 57.1
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.9e-87 326.6 289 53.6
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 1.6e-86 323.6 286 53.5
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.6e-86 322.4 284 53.9
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 4.8e-86 322.0 289 53.3
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.4e-85 320.5 284 52.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.8e-85 320.1 284 53.5
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 3.1e-85 319.3 284 53.5
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.0e-85 318.9 284 52.5
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 5.3e-85 318.5 282 53.5
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.5e-84 317.0 284 53.2
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.0e-84 316.6 282 53.2
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 2.6e-84 316.2 290 51.7
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.4e-84 315.8 285 50.9
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 3.4e-84 315.8 282 52.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.4e-84 315.8 285 51.2
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.8e-84 315.1 284 52.1
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 5.8e-84 315.1 284 52.8
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 5.8e-84 315.1 285 51.2
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 5.8e-84 315.1 284 53.5
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 9.9e-84 314.3 282 52.5
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.2e-83 313.2 284 51.4
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.9e-83 312.8 284 52.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.9e-83 312.8 284 52.8
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.9e-83 312.8 285 50.5
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.9e-83 312.8 284 52.1
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 3.8e-83 312.4 284 51.4
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.8e-83 312.4 289 50.9
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.8e-83 312.4 284 51.8
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.8e-83 312.4 284 52.8
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.9e-83 312.0 284 52.1
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 4.9e-83 312.0 284 52.1
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 6.4e-83 311.6 284 51.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 6.4e-83 311.6 289 49.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 6.4e-83 311.6 289 50.2
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 8.4e-83 311.2 284 50.7
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 8.4e-83 311.2 284 51.4
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 8.4e-83 311.2 284 51.8
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.4e-82 309.7 285 49.8
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.4e-82 309.7 284 52.5
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.4e-82 309.7 289 50.9
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.2e-82 309.3 284 52.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 4.2e-82 308.9 289 50.2
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 4.2e-82 308.9 284 52.1
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 5.4e-82 308.5 284 51.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 5.4e-82 308.5 284 51.4
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 5.4e-82 308.5 284 51.8
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 5.4e-82 308.5 284 51.4
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 7.1e-82 308.1 284 51.4
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 7.1e-82 308.1 291 55.0
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 9.3e-82 307.8 284 51.8
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 9.3e-82 307.8 284 51.4
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.2e-81 307.4 286 51.4
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.6e-81 307.0 284 51.4
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.6e-81 307.0 284 52.1
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.1e-81 306.6 284 50.4
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.1e-81 306.6 295 50.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.7e-81 306.2 284 53.2
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 3.5e-81 305.8 284 52.1
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.5e-81 305.8 284 51.1
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.6e-81 305.4 284 51.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.6e-81 305.4 285 50.5
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 6.0e-81 305.1 284 50.7
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 6.0e-81 305.1 300 48.7
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 7.9e-81 304.7 284 50.7
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 7.9e-81 304.7 284 50.7
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 7.9e-81 304.7 289 50.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.0e-80 304.3 285 50.9
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.3e-80 303.9 284 51.8
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.8e-80 303.5 289 50.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.8e-80 303.5 287 49.5
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.3e-80 303.1 284 51.1
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.3e-80 303.1 284 50.7
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.0e-80 302.8 284 51.1
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-80 302.4 284 51.1
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 3.9e-80 302.4 284 49.3
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 5.1e-80 302.0 284 51.1
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 50.7
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 50.7
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 51.1
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 49.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 6.7e-80 301.6 284 50.7
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 8.7e-80 301.2 284 50.7
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.1e-79 300.8 282 48.9
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 1.1e-79 300.8 285 50.2
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.5e-79 300.4 284 51.1
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.9e-79 300.1 284 49.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.9e-79 300.1 289 49.1
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.3e-79 299.3 284 50.4
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 3.3e-79 299.3 284 50.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 3.3e-79 299.3 284 50.7
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.3e-79 299.3 308 48.7
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 4.3e-79 298.9 284 48.9
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 5.6e-79 298.5 284 50.4
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-78 297.4 284 50.4
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.6e-78 297.0 284 50.0
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.8e-78 296.2 279 50.9
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 8.1e-78 294.7 284 49.6
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 2.4e-77 293.1 282 49.3
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 4.5e-76 288.9 307 47.6
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.7e-75 287.0 316 45.9
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.4e-74 283.9 333 42.9
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.2e-74 282.7 328 43.3
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 4.6e-73 278.9 283 48.4
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.1e-71 274.2 306 47.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.8e-70 269.6 244 52.0
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 8.1e-70 268.1 279 48.0
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.5e-68 262.3 382 37.7
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 5.8e-68 261.9 301 44.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.9e-67 259.6 225 54.2
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.6e-65 253.8 204 55.9
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 4.6e-65 252.3 436 34.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 8.7e-64 248.1 204 54.4
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.8e-62 242.3 205 53.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 5.5e-58 228.8 184 56.5
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.1e-47 194.5 283 36.7
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 4.1e-45 186.0 282 37.2
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.2e-42 176.0 219 42.9
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 8.8e-40 168.3 277 36.8
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 8.2e-38 161.8 121 57.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 4.1e-29 132.9 104 55.8
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 4.8e-22 109.4 137 41.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.7e-14 84.3 58 67.2
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-14 84.0 68 58.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.2e-14 84.0 109 41.3
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.1e-13 80.1 56 62.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.2e-13 78.6 56 62.5
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.0e-11 75.1 180 30.0
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 9.5e-10 68.6 78 41.0
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.8e-09 67.0 62 50.0
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 6.4e-06 55.8 50 54.0


User provided reference genes

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