Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 0.0e+00 1080.1 544 100.0
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 9.7e-186 654.1 498 63.7
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 1.5e-183 646.7 477 65.4
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.2e-156 557.4 526 53.0
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 1.3e-150 537.3 502 52.8
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 1.3e-145 520.8 497 53.1
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 3.2e-144 516.2 497 51.7
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.6e-143 513.8 497 51.1
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 2.8e-140 503.1 498 51.2
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 4.7e-140 502.3 498 50.4
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 4.0e-139 499.2 503 51.1
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 1.2e-138 497.7 474 53.8
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 2.6e-138 496.5 498 50.2
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 1.9e-136 490.3 497 49.9
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 3.2e-136 489.6 531 48.6
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 4.1e-136 489.2 513 48.9
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 4.1e-136 489.2 499 50.1
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 5.4e-136 488.8 499 49.3
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 5.4e-136 488.8 497 49.7
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 7.0e-136 488.4 531 48.0
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 9.2e-136 488.0 534 48.3
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.2e-135 487.6 497 48.3
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.6e-135 487.3 499 50.1
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 3.5e-135 486.1 497 49.5
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 3.5e-135 486.1 511 49.5
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 4.6e-135 485.7 497 48.9
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 4.6e-135 485.7 497 48.9
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 4.6e-135 485.7 497 48.7
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 4.6e-135 485.7 510 49.8
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 4.6e-135 485.7 531 47.8
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 1.0e-134 484.6 478 50.6
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 1.0e-134 484.6 514 49.4
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.0e-134 484.6 531 47.3
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 1.3e-134 484.2 497 48.3
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-134 484.2 511 49.7
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 1.5e-133 480.7 538 47.6
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 1.5e-133 480.7 500 48.4
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.9e-133 480.3 503 49.3
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 2.5e-133 479.9 514 48.2
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.5e-133 479.9 497 48.5
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 4.3e-133 479.2 497 48.9
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 7.3e-133 478.4 497 48.5
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 9.5e-133 478.0 522 47.5
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 9.5e-133 478.0 497 48.5
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 2.8e-132 476.5 505 49.3
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 2.8e-132 476.5 501 48.9
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 6.2e-132 475.3 497 48.9
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.4e-131 474.2 497 48.1
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 1.8e-131 473.8 497 47.9
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.8e-131 471.9 511 48.3
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 8.9e-131 471.5 513 48.9
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.5e-130 470.7 497 47.9
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 2.0e-130 470.3 528 47.0
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 5.8e-130 468.8 501 48.3
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 5.8e-130 468.8 497 48.1
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 7.5e-130 468.4 506 47.6
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 9.9e-130 468.0 507 47.7
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.3e-129 467.6 501 47.7
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.7e-129 467.2 500 47.4
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 1.7e-129 467.2 498 49.0
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 4.9e-129 465.7 524 46.9
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 8.3e-129 464.9 497 46.7
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 3.2e-128 463.0 516 47.7
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 4.1e-128 462.6 529 48.2
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 7.1e-128 461.8 501 48.1
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 9.2e-128 461.5 499 47.9
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 9.2e-128 461.5 511 47.4
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 1.2e-127 461.1 528 48.3
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 1.6e-127 460.7 529 48.0
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.6e-127 460.7 528 48.1
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.6e-127 460.7 497 47.7
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 7.8e-127 458.4 528 47.9
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 1.0e-126 458.0 444 50.9
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.3e-126 457.6 544 46.0
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 1.7e-126 457.2 481 48.6
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 1.7e-126 457.2 530 47.4
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 3.9e-126 456.1 497 46.1
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 3.9e-126 456.1 530 46.8
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 5.1e-126 455.7 509 47.9
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 1.1e-125 454.5 542 46.1
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.1e-125 454.5 497 46.1
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 2.5e-125 453.4 504 46.6
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 5.6e-125 452.2 498 47.2
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 9.6e-125 451.4 483 49.7
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 1.2e-124 451.1 499 46.7
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-124 450.3 490 49.2
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.8e-124 449.9 363 60.9
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 3.6e-124 449.5 498 48.4
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 4.7e-124 449.1 528 47.3
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 8.1e-124 448.4 516 45.9
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 5.2e-123 445.7 414 50.7
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 6.8e-123 445.3 499 45.7
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 8.9e-123 444.9 537 45.1
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 5.8e-122 442.2 498 47.4
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.2e-121 440.3 497 46.1
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 4.9e-121 439.1 499 46.7
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 4.9e-121 439.1 497 44.7
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 3.2e-120 436.4 499 46.9
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 9.3e-120 434.9 513 44.6
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.6e-119 434.1 499 45.3
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 7.8e-119 431.8 500 45.4
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 1.3e-118 431.0 498 43.4
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 3.0e-118 429.9 558 42.3
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 3.0e-118 429.9 499 45.7
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.9e-117 427.2 458 48.9
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 5.6e-117 425.6 552 41.5
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 4.0e-115 419.5 498 45.2
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 5.3e-115 419.1 500 44.4
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 9.9e-114 414.8 448 47.3
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 4.2e-112 409.5 437 47.6
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 5.6e-109 399.1 589 39.4
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 5.6e-109 399.1 435 46.4
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 5.6e-109 399.1 546 42.3
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 7.3e-109 398.7 567 40.9
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.6e-108 396.4 409 49.4
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.8e-107 394.0 559 41.0
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 4.5e-106 389.4 499 43.3
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 1.3e-105 387.9 443 45.8
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.7e-105 387.5 500 42.8
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.6e-103 380.9 498 42.2
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 9.0e-99 365.2 497 41.9
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 1.7e-97 360.9 530 40.6
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.9e-97 360.1 414 45.2
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 8.7e-94 348.6 401 45.9
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.4e-78 298.1 502 36.9
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.2e-73 280.8 312 46.8
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 1.1e-72 278.5 332 46.4
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 7.9e-71 272.3 444 37.6
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.9e-65 253.8 315 41.6
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 7.2e-64 249.2 276 47.1
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 3.4e-53 213.8 312 41.0
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 9.8e-45 185.7 497 28.6
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 7.0e-27 126.3 105 57.1
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 6.8e-14 83.2 74 56.8
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.3e-12 79.0 122 31.1
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 3.2e-11 74.3 66 51.5
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 5.6e-08 63.5 63 44.4
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 1.2e-07 62.4 168 27.4
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 1.2e-07 62.4 67 40.3
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 2.1e-07 61.6 168 27.4
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 2.8e-07 61.2 58 51.7
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 1.1e-06 59.3 171 22.8
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 1.1e-06 59.3 55 52.7
COL.COLO4_15958 Corchorus olitorius HOM05D003335 ORTHO05D003853 1.4e-06 58.9 165 25.5
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 6.8e-06 56.6 196 20.9


User provided reference genes

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