Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 4.9e-174 614.4 315 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 2.9e-65 253.1 222 61.3
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.9e-64 250.4 211 57.3
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 9.3e-64 248.1 211 59.2
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 1.8e-62 243.8 225 52.4
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.3e-62 243.4 211 54.5
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 5.1e-62 242.3 211 55.0
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 5.1e-62 242.3 210 56.7
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 5.1e-62 242.3 221 54.8
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 6.7e-62 241.9 224 54.9
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 1.1e-61 241.1 224 54.9
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.5e-61 240.7 204 58.3
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 1.5e-61 240.7 219 53.9
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 2.5e-61 240.0 233 53.2
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 3.3e-61 239.6 243 49.4
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 3.3e-61 239.6 216 55.6
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.3e-61 239.6 216 55.6
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.3e-61 239.6 216 55.1
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 4.3e-61 239.2 228 52.6
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 5.6e-61 238.8 236 52.1
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 5.6e-61 238.8 209 55.0
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 5.6e-61 238.8 221 55.2
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 7.4e-61 238.4 249 51.0
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 7.4e-61 238.4 219 53.0
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 9.6e-61 238.0 221 53.4
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.3e-60 237.7 209 56.0
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 1.3e-60 237.7 238 50.4
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 1.3e-60 237.7 208 56.7
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 1.6e-60 237.3 210 56.2
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.6e-60 237.3 206 57.3
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.6e-60 237.3 238 51.3
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 2.1e-60 236.9 206 56.3
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 2.8e-60 236.5 210 55.7
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.8e-60 236.5 239 51.9
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 2.8e-60 236.5 204 54.4
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 3.7e-60 236.1 196 59.2
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 3.7e-60 236.1 224 53.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 3.7e-60 236.1 221 53.8
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 4.8e-60 235.7 210 55.7
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 4.8e-60 235.7 210 55.7
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 4.8e-60 235.7 221 53.4
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 6.2e-60 235.3 210 55.7
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 6.2e-60 235.3 216 54.2
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 6.2e-60 235.3 221 52.0
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 6.2e-60 235.3 221 52.0
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 6.2e-60 235.3 260 48.8
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 6.2e-60 235.3 223 53.8
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 8.1e-60 235.0 262 50.0
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.1e-59 234.6 219 52.5
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.1e-59 234.6 209 54.5
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 1.1e-59 234.6 221 53.8
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 1.1e-59 234.6 208 53.8
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 1.4e-59 234.2 243 49.0
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 1.4e-59 234.2 209 55.0
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 1.4e-59 234.2 209 55.0
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.4e-59 234.2 252 49.6
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.4e-59 234.2 245 48.6
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 1.8e-59 233.8 210 54.8
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.8e-59 233.8 216 53.7
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.8e-59 233.8 221 53.8
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 1.8e-59 233.8 221 53.8
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 2.4e-59 233.4 209 54.1
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 2.4e-59 233.4 210 54.8
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 2.4e-59 233.4 221 53.8
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 3.1e-59 233.0 212 53.8
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 3.1e-59 233.0 208 54.8
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 4.0e-59 232.6 209 54.5
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 4.0e-59 232.6 200 58.0
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 5.3e-59 232.3 195 58.5
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 5.3e-59 232.3 225 52.0
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 5.3e-59 232.3 200 56.0
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 5.3e-59 232.3 209 55.5
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 6.9e-59 231.9 209 55.5
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 6.9e-59 231.9 213 54.5
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 1.2e-58 231.1 202 56.4
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 1.2e-58 231.1 204 55.9
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 1.5e-58 230.7 204 56.4
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.5e-58 230.7 206 54.4
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 2.6e-58 229.9 209 55.0
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.5e-58 229.2 259 48.3
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.5e-58 229.2 250 49.2
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 5.8e-58 228.8 211 55.5
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 5.8e-58 228.8 221 52.0
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 1.3e-57 227.6 209 53.1
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 1.7e-57 227.3 246 48.8
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 1.7e-57 227.3 213 53.5
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 1.7e-57 227.3 206 52.9
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 2.9e-57 226.5 209 54.1
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.9e-57 226.5 206 53.9
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 3.8e-57 226.1 200 56.5
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 4.9e-57 225.7 208 53.8
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 4.9e-57 225.7 258 50.0
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 8.4e-57 224.9 190 58.4
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 8.4e-57 224.9 190 58.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 8.4e-57 224.9 246 48.4
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 8.4e-57 224.9 189 61.9
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.1e-56 224.6 199 55.8
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 1.4e-56 224.2 208 54.8
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 1.9e-56 223.8 204 54.9
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 1.9e-56 223.8 204 54.9
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 1.9e-56 223.8 253 47.8
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 5.5e-56 222.2 209 53.1
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 7.1e-56 221.9 188 58.0
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 7.1e-56 221.9 209 52.6
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 1.6e-55 220.7 253 46.6
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 2.7e-55 219.9 275 46.2
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 2.7e-55 219.9 275 46.5
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 7.9e-55 218.4 208 52.4
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 1.0e-54 218.0 207 53.1
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 1.3e-54 217.6 195 54.4
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 6.7e-54 215.3 196 55.1
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 6.7e-54 215.3 196 55.1
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 6.7e-54 215.3 200 52.5
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 1.5e-53 214.2 202 54.5
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 1.3e-52 211.1 210 50.5
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 1.6e-52 210.7 210 51.9
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.2e-52 208.4 240 46.2
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.1e-51 208.0 236 47.0
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 6.9e-51 205.3 221 47.1
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 2.0e-50 203.8 299 38.8
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 4.5e-50 202.6 207 50.7
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-45 188.0 329 35.9
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 5.7e-45 185.7 168 51.2
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 2.2e-44 183.7 167 53.9
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 8.2e-44 181.8 175 51.4
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.0e-42 177.2 170 51.2
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.2e-40 168.7 161 51.6
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.0e-38 163.3 162 48.1
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 6.7e-38 162.2 214 44.9
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.1e-37 161.4 169 49.7
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.7e-37 158.3 225 39.6
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.8e-36 156.0 156 49.4
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 1.5e-34 151.0 157 49.0
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 7.7e-34 148.7 205 42.4
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.3e-30 137.1 117 53.8
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.5e-29 134.4 185 43.2
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 9.1e-27 125.2 170 40.0
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.0e-25 121.7 106 54.7
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.0e-25 121.7 106 54.7
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 3.9e-22 109.8 96 58.3
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-21 108.2 102 49.0
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 1.5e-21 107.8 96 52.1
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 3.1e-19 100.1 96 46.9
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.5e-18 96.7 88 51.1
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.9e-17 93.6 130 39.2
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.2e-16 89.7 80 55.0
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 1.2e-15 88.2 78 55.1
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 1.7e-12 77.8 206 31.6
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 1.3e-09 68.2 84 44.0
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 2.2e-09 67.4 144 34.7
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 6.1e-07 59.3 131 29.0
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 8.0e-07 58.9 84 41.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 2.3e-06 57.4 200 29.0
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.0e-06 57.0 122 33.6


User provided reference genes

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