Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_34670 Physcomitrium patens HOM05D004827 ORTHO05D005395 1.3e-84 316.2 146 100.0
Pp3c10_11200 Physcomitrium patens HOM05D004827 ORTHO05D005395 2.5e-32 142.5 109 62.4
Mapoly0033s0083 Marchantia polymorpha HOM05D004827 ORTHO05D005395 4.3e-32 141.7 112 58.9
Cpa.g.sc65.38 Carica papaya HOM05D004827 ORTHO05D005395 1.4e-30 136.7 112 58.0
EL10Ac9g22587 Beta vulgaris HOM05D004827 ORTHO05D005395 1.8e-30 136.3 109 59.6
Nitab4.5_0004993g0010 Nicotiana tabacum HOM05D004827 ORTHO05D005395 4.1e-30 135.2 109 60.6
Solyc11g069040.3 Solanum lycopersicum HOM05D004827 ORTHO05D005395 4.1e-30 135.2 112 58.9
Sopen11g027750 Solanum pennellii HOM05D004827 ORTHO05D005395 4.1e-30 135.2 109 60.6
Mapoly0033s0085 Marchantia polymorpha HOM05D004827 ORTHO05D005395 1.2e-29 133.7 112 58.0
Nitab4.5_0001442g0020 Nicotiana tabacum HOM05D004827 ORTHO05D005395 2.0e-29 132.9 109 60.6
PGSC0003DMG400008074 Solanum tuberosum HOM05D004827 ORTHO05D005395 2.0e-29 132.9 109 59.6
Manes.04G014900 Manihot esculenta HOM05D004827 ORTHO05D005395 2.6e-29 132.5 128 56.2
AUR62029203 Chenopodium quinoa HOM05D004827 ORTHO05D005395 3.4e-29 132.1 116 55.2
Lj2A1013G28 Lonicera japonica HOM05D004827 ORTHO05D005395 3.4e-29 132.1 112 57.1
AUR62014938 Chenopodium quinoa HOM05D004827 ORTHO05D005395 4.5e-29 131.7 116 55.2
SMO353G0047 Selaginella moellendorffii HOM05D004827 ORTHO05D005395 7.7e-29 131.0 109 57.8
TWI38G0398 Tripterygium wilfordii HOM05D004827 ORTHO05D005395 7.7e-29 131.0 110 58.2
Dinv34726 Davidia involucrata HOM05D004827 ORTHO05D005395 1.0e-28 130.6 109 57.8
Sc15g0001580 Simmondsia chinensis HOM05D004827 ORTHO05D005395 1.3e-28 130.2 119 54.6
COL.COLO4_11061 Corchorus olitorius HOM05D004827 ORTHO05D005395 1.7e-28 129.8 109 57.8
Atru.chr3.3541 Acer truncatum HOM05D004827 ORTHO05D005395 2.2e-28 129.4 119 56.3
Lj3g0013572 Lotus japonicus HOM05D004827 ORTHO05D005395 2.2e-28 129.4 119 54.6
MD11G1146100 Malus domestica HOM05D004827 ORTHO05D005395 2.2e-28 129.4 119 54.6
Prupe.6G109100 Prunus persica HOM05D004827 ORTHO05D005395 2.2e-28 129.4 119 54.6
Sed0007609 Sechium edule HOM05D004827 ORTHO05D005395 2.2e-28 129.4 118 55.1
Aqoxy1G01146 Aquilegia oxysepala HOM05D004827 ORTHO05D005395 2.9e-28 129.0 117 54.7
Cc01_g10500 Coffea canephora HOM05D004827 ORTHO05D005395 3.8e-28 128.6 118 55.9
HanXRQChr11g0346211 Helianthus annuus HOM05D004827 ORTHO05D005395 5.0e-28 128.3 118 54.2
Actinidia24133 Actinidia chinensis HOM05D004827 ORTHO05D005395 6.5e-28 127.9 109 56.9
CsaV3_1G013530 Cucumis sativus L. HOM05D004827 ORTHO05D005395 6.5e-28 127.9 118 55.9
MBI12_g32344_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 6.5e-28 127.9 119 54.6
Cfa010307 Carpinus fangiana HOM05D004827 ORTHO05D005395 8.5e-28 127.5 119 53.8
SEGI_26473 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 1.1e-27 127.1 109 56.9
SEGI_34492 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 1.1e-27 127.1 109 56.9
TAR633G0460 Trochodendron aralioides HOM05D004827 ORTHO05D005395 1.1e-27 127.1 112 56.2
Nn6g35282 Nelumbo nucifera HOM05D004827 ORTHO05D005395 1.4e-27 126.7 119 53.8
PSO063G0803 Papaver somniferum HOM05D004827 ORTHO05D005395 1.4e-27 126.7 118 55.1
Thecc.09G349000 Theobroma cacao HOM05D004827 ORTHO05D005395 1.4e-27 126.7 118 54.2
CAN.G546.14 Capsicum annuum HOM05D004827 ORTHO05D005395 1.9e-27 126.3 104 58.7
ClCG03G002770 Citrullus lanatus HOM05D004827 ORTHO05D005395 1.9e-27 126.3 118 54.2
MELO3C004950.2 Cucumis melo HOM05D004827 ORTHO05D005395 1.9e-27 126.3 118 55.1
vmacro03268 Vaccinium macrocarpon HOM05D004827 ORTHO05D005395 1.9e-27 126.3 109 56.0
GSVIVG01031499001 Vitis vinifera HOM05D004827 ORTHO05D005395 1.9e-27 126.3 119 54.6
Phvul.011G084400 Phaseolus vulgaris HOM05D004827 ORTHO05D005395 2.5e-27 125.9 119 52.9
Ah.01g003210 Amaranthus hybridus HOM05D004827 ORTHO05D005395 3.2e-27 125.6 126 50.0
CSS0005897 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 4.2e-27 125.2 112 53.6
ECA248G1504 Erigeron canadensis HOM05D004827 ORTHO05D005395 4.2e-27 125.2 109 54.1
Lsat_1_v5_gn_1_62721 Lactuca sativa HOM05D004827 ORTHO05D005395 4.2e-27 125.2 106 55.7
Rhsim13G0099200 Rhododendron simsii HOM05D004827 ORTHO05D005395 5.5e-27 124.8 109 55.0
ATR0219G018 Amborella trichopoda HOM05D004827 ORTHO05D005395 9.4e-27 124.0 113 54.9
CANSAT78G0379 Cannabis sativa HOM05D004827 ORTHO05D005395 9.4e-27 124.0 118 53.4
Carub.0001s0746 Capsella rubella HOM05D004827 ORTHO05D005395 9.4e-27 124.0 112 54.5
Ciclev10029169m.g Citrus clementina HOM05D004827 ORTHO05D005395 9.4e-27 124.0 116 54.3
Glyma.12G079700 Glycine max HOM05D004827 ORTHO05D005395 9.4e-27 124.0 119 52.1
Gohir.A13G232600 Gossypium hirsutum HOM05D004827 ORTHO05D005395 9.4e-27 124.0 112 54.5
MD00G1032700 Malus domestica HOM05D004827 ORTHO05D005395 9.4e-27 124.0 119 52.1
THA.LOC104808316 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 9.4e-27 124.0 112 53.6
VMungo1127G2270 Vigna mungo HOM05D004827 ORTHO05D005395 9.4e-27 124.0 119 51.3
CiPaw.13G119600 Carya illinoinensis HOM05D004827 ORTHO05D005395 1.2e-26 123.6 119 52.9
Haze_23732 Corylus avellana HOM05D004827 ORTHO05D005395 1.2e-26 123.6 119 52.9
FvH4_3g30960 Fragaria vesca HOM05D004827 ORTHO05D005395 1.2e-26 123.6 109 54.1
FAN11G0101 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.2e-26 123.6 109 54.1
FAN21G3549 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.2e-26 123.6 109 54.1
FAN25G1724 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.2e-26 123.6 109 54.1
Glyma.11G194300 Glycine max HOM05D004827 ORTHO05D005395 1.2e-26 123.6 119 52.1
FAN16G1413 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.6e-26 123.2 109 53.2
A06p05180 Brassica napus HOM05D004827 ORTHO05D005395 2.1e-26 122.9 112 52.7
Gohir.D13G238300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.1e-26 122.9 112 53.6
Gorai.013G269200 Gossypium raimondii HOM05D004827 ORTHO05D005395 2.1e-26 122.9 112 53.6
Aa31sc241G20 Aethionema arabicum HOM05D004827 ORTHO05D005395 2.7e-26 122.5 109 55.0
Psat0s3927g0040 Pisum sativum HOM05D004827 ORTHO05D005395 2.7e-26 122.5 125 52.0
PGR102G0165 Punica granatum HOM05D004827 ORTHO05D005395 2.7e-26 122.5 128 50.8
TPR.G6148 Trifolium pratense HOM05D004827 ORTHO05D005395 2.7e-26 122.5 125 52.0
AL1G18470 Arabidopsis lyrata HOM05D004827 ORTHO05D005395 3.6e-26 122.1 112 53.6
AT1G08110 Arabidopsis thaliana HOM05D004827 ORTHO05D005395 3.6e-26 122.1 112 53.6
BcaC05g24729 Brassica carinata HOM05D004827 ORTHO05D005395 3.6e-26 122.1 112 52.7
C05p06230 Brassica napus HOM05D004827 ORTHO05D005395 3.6e-26 122.1 112 52.7
BolC5t29377H Brassica oleracea HOM05D004827 ORTHO05D005395 3.6e-26 122.1 112 52.7
PSO339G5318 Papaver somniferum HOM05D004827 ORTHO05D005395 3.6e-26 122.1 118 53.4
RcHm_v2.0_Chr5g0057511 Rosa chinensis HOM05D004827 ORTHO05D005395 3.6e-26 122.1 109 53.2
BraA06t23724Z Brassica rapa HOM05D004827 ORTHO05D005395 1.0e-25 120.6 116 50.9
Potri.009G007200 Populus trichocarpa HOM05D004827 ORTHO05D005395 1.0e-25 120.6 112 54.5
SGA_v2.0_scaffold263G45967 Striga asiatica HOM05D004827 ORTHO05D005395 1.0e-25 120.6 109 52.3
BcaB07g34053 Brassica carinata HOM05D004827 ORTHO05D005395 1.4e-25 120.2 109 53.2
Lalb_Chr03g0027631 Lupinus albus HOM05D004827 ORTHO05D005395 1.4e-25 120.2 109 52.3
Medtr4g057685 Medicago truncatula HOM05D004827 ORTHO05D005395 1.4e-25 120.2 121 52.1
Os05g0295800 Oryza sativa ssp. japonica HOM05D004827 ORTHO05D005395 1.4e-25 120.2 119 50.4
Sp1g06750 Schrenkiella parvula HOM05D004827 ORTHO05D005395 1.4e-25 120.2 112 52.7
CDE06G2782 Ceratophyllum demersum HOM05D004827 ORTHO05D005395 1.8e-25 119.8 112 51.8
Ah.01g003220 Amaranthus hybridus HOM05D004827 ORTHO05D005395 2.3e-25 119.4 125 50.4
Duzib150G1276 Durio zibethinus HOM05D004827 ORTHO05D005395 2.3e-25 119.4 109 52.3
Sabra09G0004200 Salix brachista HOM05D004827 ORTHO05D005395 3.0e-25 119.0 112 52.7
Hund01469 Selenicereus undatus HOM05D004827 ORTHO05D005395 3.0e-25 119.0 125 49.6
Thhalv10008645m.g Eutrema salsugineum HOM05D004827 ORTHO05D005395 3.9e-25 118.6 121 51.2
HPP92_002620 Vanilla planifolia HOM05D004827 ORTHO05D005395 3.9e-25 118.6 117 50.4
arahy.Tifrunner.gnm1.ann1.4ZYX81 Arachis hypogaea HOM05D004827 ORTHO05D005395 5.1e-25 118.2 124 51.6
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea HOM05D004827 ORTHO05D005395 6.7e-25 117.9 124 51.6
CSS0024800 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 6.7e-25 117.9 142 44.4
CARHR007920 Cardamine hirsuta HOM05D004827 ORTHO05D005395 6.7e-25 117.9 112 52.7
Duzib170G0342 Durio zibethinus HOM05D004827 ORTHO05D005395 6.7e-25 117.9 109 51.4
MSTRG.21095 Avicennia marina HOM05D004827 ORTHO05D005395 1.5e-24 116.7 118 50.0
HPP92_002675 Vanilla planifolia HOM05D004827 ORTHO05D005395 1.5e-24 116.7 117 49.6
MSTRG.17890 Avicennia marina HOM05D004827 ORTHO05D005395 2.0e-24 116.3 118 50.0
CSS0040325 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 2.6e-24 115.9 142 43.7
ECA248G0211 Erigeron canadensis HOM05D004827 ORTHO05D005395 2.6e-24 115.9 109 50.5
SalBow3G2012 Salvia bowleyana HOM05D004827 ORTHO05D005395 3.3e-24 115.5 109 51.4
Gohir.D03G138500 Gossypium hirsutum HOM05D004827 ORTHO05D005395 4.4e-24 115.2 109 51.4
Gorai.003G145200 Gossypium raimondii HOM05D004827 ORTHO05D005395 4.4e-24 115.2 109 51.4
Gohir.A03G030000 Gossypium hirsutum HOM05D004827 ORTHO05D005395 5.7e-24 114.8 109 51.4
Gohir.A03G030100 Gossypium hirsutum HOM05D004827 ORTHO05D005395 7.4e-24 114.4 109 51.4
SGA_v2.0_scaffold116G32194 Striga asiatica HOM05D004827 ORTHO05D005395 7.4e-24 114.4 109 51.4
Gohir.A03G030200 Gossypium hirsutum HOM05D004827 ORTHO05D005395 9.7e-24 114.0 109 50.5
Gohir.D03G138300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 9.7e-24 114.0 109 50.5
Gorai.003G145000 Gossypium raimondii HOM05D004827 ORTHO05D005395 9.7e-24 114.0 109 50.5
Gohir.D03G138400 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.8e-23 112.5 109 50.5
Gorai.003G145100 Gossypium raimondii HOM05D004827 ORTHO05D005395 2.8e-23 112.5 109 50.5
Ca_19305_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 3.7e-23 112.1 121 51.2
HanXRQChr01g0019511 Helianthus annuus HOM05D004827 ORTHO05D005395 4.8e-23 111.7 109 48.6
Zm00001eb086540 Zea mays HOM05D004827 ORTHO05D005395 1.1e-22 110.5 118 50.0
Migut.D02265 Erythranthe guttata HOM05D004827 ORTHO05D005395 1.8e-22 109.8 109 49.5
Cre04.g216100 Chlamydomonas reinhardtii HOM05D004827 ORTHO05D005395 2.4e-22 109.4 112 49.1
THA.LOC104800584 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 9.1e-22 107.5 112 48.2
Peaxi162Scf00682g00012 Petunia axillaris HOM05D004827 ORTHO05D005395 3.8e-20 102.1 107 49.5
unitig_736.g22404 Utricularia gibba HOM05D004827 ORTHO05D005395 6.5e-20 101.3 97 51.5
THA.LOC104817647 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 1.9e-19 99.8 83 53.0
Oeu018368.2 Olea europaea HOM05D004827 ORTHO05D005395 4.7e-18 95.1 142 38.7
Glyma.11G194200 Glycine max HOM05D004827 ORTHO05D005395 6.7e-17 91.3 83 51.8
SGA_v2.0_scaffold180G39601 Striga asiatica HOM05D004827 ORTHO05D005395 6.7e-17 91.3 119 42.9
CBR_g8002 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-16 88.6 74 56.8
Pp3c14_6610 Physcomitrium patens HOM05D004827 ORTHO05D005395 3.7e-15 85.5 64 59.4
Gohir.D03G138550 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.0e-13 79.7 108 43.5
Gorai.003G145300 Gossypium raimondii HOM05D004827 ORTHO05D005395 2.0e-13 79.7 108 43.5
BcaB07g34056 Brassica carinata HOM05D004827 ORTHO05D005395 1.0e-12 77.4 153 33.3
Hma1.2p1_1647F.1_g295520 Hydrangea macrophylla HOM05D004827 ORTHO05D005395 3.2e-11 72.4 62 50.0
PRCOL_00001503 Prasinoderma coloniale HOM05D004827 ORTHO05D005395 7.2e-11 71.2 130 32.3
QL01p015669 Quercus lobata HOM05D004827 ORTHO05D005395 9.4e-11 70.9 62 48.4
RcHm_v2.0_Chr5g0057571 Rosa chinensis HOM05D004827 ORTHO05D005395 2.7e-10 69.3 62 46.8
Oeu018480.1 Olea europaea HOM05D004827 ORTHO05D005395 4.4e-08 62.0 52 51.9
C07p01610 Brassica napus HOM05D004827 ORTHO05D005395 5.7e-08 61.6 54 51.9
QL01p015675 Quercus lobata HOM05D004827 ORTHO05D005395 3.7e-07 58.9 50 62.0
Ca_19304_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 8.2e-07 57.8 50 62.0
C03p63280 Brassica napus HOM05D004827 ORTHO05D005395 3.1e-06 55.8 68 39.7
BcaC01g02577 Brassica carinata HOM05D004827 ORTHO05D005395 7.0e-06 54.7 70 38.6


User provided reference genes

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