Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-209 733.0 359 100.0
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-143 513.1 359 67.1
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-141 505.4 360 68.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-134 483.4 360 65.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.3e-117 424.5 333 63.4
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.5e-107 392.1 267 70.8
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.2e-87 325.5 307 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.9e-87 324.7 304 52.3
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.6e-86 323.2 280 55.7
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-82 309.3 306 51.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-78 297.0 306 50.0
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-78 296.2 287 50.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-73 279.3 297 46.5
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.1e-71 274.6 298 46.0
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 9.9e-70 268.1 304 44.4
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 9.9e-70 268.1 304 43.4
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 8.4e-69 265.0 301 43.9
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.1e-67 260.4 306 42.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.1e-67 260.4 286 46.2
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.8e-67 258.5 308 41.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.0e-66 258.1 285 46.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 6.6e-66 255.4 329 40.1
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 6.6e-66 255.4 285 43.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.1e-65 254.6 293 42.7
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.9e-65 253.8 291 43.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.3e-65 253.1 292 42.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 5.6e-65 252.3 311 42.8
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.6e-65 251.5 293 42.7
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-64 251.1 308 41.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-64 251.1 308 41.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.3e-64 251.1 292 43.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-64 251.1 293 42.7
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.6e-64 250.8 300 40.7
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.6e-64 250.8 296 42.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.6e-64 250.8 293 41.6
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.6e-64 250.8 285 43.5
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-64 250.4 285 43.2
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.1e-64 250.4 300 40.7
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.6e-64 249.6 304 40.1
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.6e-64 249.6 295 42.7
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.6e-64 249.6 313 40.3
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.8e-64 249.2 308 40.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 4.8e-64 249.2 293 42.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.8e-64 249.2 293 42.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.8e-64 249.2 307 40.1
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.8e-64 249.2 295 44.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 4.8e-64 249.2 297 42.1
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.2e-64 248.8 293 42.3
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.2e-64 248.8 293 43.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 6.2e-64 248.8 294 42.9
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 8.1e-64 248.4 291 43.6
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.1e-64 248.4 305 39.3
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 8.1e-64 248.4 308 42.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.1e-64 248.4 311 41.2
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.1e-63 248.1 284 43.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-63 248.1 297 42.4
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.4e-63 247.7 291 42.3
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.4e-63 247.7 309 40.5
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.8e-63 247.3 291 42.6
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.8e-63 247.3 310 40.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.8e-63 247.3 308 40.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.8e-63 247.3 283 44.5
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.8e-63 247.3 305 39.3
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.4e-63 246.9 283 43.5
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.4e-63 246.9 291 43.0
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.4e-63 246.9 284 43.0
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-63 246.5 295 41.7
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-63 246.5 310 40.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.1e-63 246.5 302 41.1
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.1e-63 246.5 301 41.2
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.0e-63 246.1 310 41.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 5.3e-63 245.7 301 41.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 5.3e-63 245.7 301 41.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.3e-63 245.7 301 42.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.3e-63 245.7 294 42.5
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.3e-63 245.7 301 40.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.9e-63 245.4 305 41.6
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 6.9e-63 245.4 301 41.5
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 6.9e-63 245.4 301 41.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 9.0e-63 245.0 310 40.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 9.0e-63 245.0 283 43.1
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.0e-63 245.0 319 40.8
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 9.0e-63 245.0 327 39.8
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-62 244.6 301 41.2
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-62 244.2 304 41.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.5e-62 244.2 308 40.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.5e-62 244.2 290 42.1
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.0e-62 243.8 328 38.4
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.0e-62 243.8 309 39.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.0e-62 243.8 308 40.6
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.0e-62 243.8 287 41.8
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.4e-62 243.0 305 39.0
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.4e-62 243.0 298 41.6
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 3.4e-62 243.0 323 39.3
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 5.8e-62 242.3 291 42.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 7.6e-62 241.9 280 42.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 7.6e-62 241.9 310 40.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 7.6e-62 241.9 325 38.5
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 9.9e-62 241.5 295 42.4
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.2e-61 240.4 285 42.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.9e-61 240.0 309 41.1
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.8e-61 239.6 333 39.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.8e-61 239.6 323 39.9
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 4.9e-61 239.2 333 39.6
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 6.4e-61 238.8 308 40.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 6.4e-61 238.8 305 39.7
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 6.4e-61 238.8 290 40.0
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 6.4e-61 238.8 287 41.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.4e-61 238.8 289 41.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 8.4e-61 238.4 318 40.9
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 8.4e-61 238.4 285 42.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.4e-60 237.7 304 38.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.4e-60 237.7 297 41.1
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.9e-60 237.3 304 40.5
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.9e-60 237.3 285 41.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.2e-60 236.1 285 41.8
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 5.4e-60 235.7 305 39.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 5.4e-60 235.7 313 40.6
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 7.1e-60 235.3 308 39.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.2e-59 234.6 272 40.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.1e-59 233.8 285 41.1
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.1e-59 233.8 285 41.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 4.6e-59 232.6 301 40.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.0e-58 231.5 327 37.6
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.7e-58 230.7 299 41.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.9e-58 229.6 320 40.9
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.9e-58 229.6 327 37.9
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 5.3e-55 219.2 273 40.3
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 9.0e-55 218.4 273 39.9
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.9e-54 214.9 307 36.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.4e-52 211.1 296 40.5
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 4.2e-52 209.5 317 38.8
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.1e-51 207.2 302 36.8
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.7e-50 202.2 243 43.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-49 199.9 306 37.9
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-48 197.6 176 57.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.8e-48 196.8 298 39.3
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-45 187.6 304 39.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.5e-45 185.7 304 40.1
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-44 183.0 304 40.1
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-42 177.2 304 38.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.8e-40 170.2 293 37.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.1e-39 168.3 197 42.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-37 160.6 309 34.6
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-37 159.5 346 32.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.4e-37 158.7 148 57.4
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.0e-34 151.8 288 37.2
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-33 148.3 148 47.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-32 144.8 299 34.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-32 144.4 101 65.3
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 2.2e-32 144.1 193 36.3
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.8e-31 141.0 197 38.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.4e-31 140.6 190 36.8
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.0e-31 138.7 195 36.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.7e-30 135.6 156 40.4
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.2e-29 134.0 193 35.8
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-28 131.0 217 37.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-26 124.4 310 29.4
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.8e-24 116.3 322 31.7
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.4e-23 114.0 302 26.2
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.2e-22 111.7 149 40.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.5e-22 111.3 146 38.4
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-22 109.8 143 38.5
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.7e-22 109.0 304 28.0
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.2e-21 107.5 151 41.1
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 2.5e-20 104.0 365 26.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.7e-19 100.5 120 40.8
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.0e-18 97.1 196 31.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.8e-18 95.5 80 50.0
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-17 95.1 224 31.7
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.4e-15 88.2 294 28.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-14 84.3 119 37.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.0e-14 84.3 117 37.6
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 9.7e-09 65.5 80 38.8
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 2.4e-07 60.8 259 24.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.1e-07 60.1 111 30.6
MCO08G244 Micromonas commoda HOM05D037687 ORTHO05D049127 9.1e-07 58.9 207 26.1
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-06 57.8 94 31.9


User provided reference genes

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