Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-207 724.5 354 100.0
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.8e-144 514.2 359 67.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.4e-138 494.6 356 66.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-137 491.9 356 66.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-120 436.8 331 65.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.3e-100 368.6 267 64.4
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.9e-94 350.1 307 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-87 327.8 301 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-87 327.8 280 55.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-87 325.9 303 53.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-80 304.3 306 52.3
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.5e-75 286.2 302 47.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-74 283.9 288 48.3
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.5e-74 281.6 287 48.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.2e-73 278.5 317 46.4
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.4e-71 274.2 330 42.4
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 8.8e-71 271.6 321 42.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.2e-69 266.9 296 44.6
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 6.3e-69 265.4 286 46.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.4e-68 264.2 283 46.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.4e-68 264.2 296 45.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 4.1e-68 262.7 293 45.4
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.3e-68 262.3 294 44.9
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.6e-67 260.8 302 44.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.6e-67 260.8 296 43.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.0e-67 260.4 296 45.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.7e-67 260.0 296 44.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 7.7e-67 258.5 296 42.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 7.7e-67 258.5 294 44.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.7e-67 258.5 290 46.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.7e-66 257.3 297 42.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.8e-66 256.1 297 45.5
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 5.0e-66 255.8 297 44.1
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.0e-66 255.8 285 45.3
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 6.5e-66 255.4 302 43.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 6.5e-66 255.4 294 43.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.9e-65 253.8 297 42.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.9e-65 253.8 294 44.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.9e-65 253.8 294 43.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.9e-65 253.8 295 44.4
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.5e-65 253.4 293 44.0
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.5e-65 253.4 334 41.9
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.2e-65 252.7 296 42.6
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 5.5e-65 252.3 294 43.2
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.2e-65 251.9 290 43.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 7.2e-65 251.9 296 42.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 9.4e-65 251.5 294 43.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.4e-65 251.5 284 45.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 9.4e-65 251.5 296 43.9
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 9.4e-65 251.5 296 43.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.2e-64 251.1 296 42.6
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-64 251.1 290 43.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.2e-64 251.1 283 44.5
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.6e-64 250.8 294 43.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.6e-64 250.8 285 43.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-64 250.4 290 44.1
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-64 250.4 285 44.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.7e-64 250.0 290 43.4
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.6e-64 249.6 294 42.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.6e-64 249.6 286 44.4
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-64 249.6 290 43.4
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 4.7e-64 249.2 288 45.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.7e-64 249.2 300 43.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.7e-64 249.2 292 44.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 6.1e-64 248.8 288 44.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 6.1e-64 248.8 293 43.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.0e-64 248.4 290 43.1
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.0e-63 248.1 291 43.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.0e-63 248.1 296 42.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.4e-63 247.7 292 42.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.3e-63 246.9 301 42.2
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.0e-63 246.5 294 43.2
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.0e-63 246.1 292 43.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.2e-63 245.7 297 43.4
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 5.2e-63 245.7 296 42.2
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 6.8e-63 245.4 297 42.8
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 6.8e-63 245.4 300 42.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 6.8e-63 245.4 307 40.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 6.8e-63 245.4 294 43.2
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 8.8e-63 245.0 290 45.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.8e-63 245.0 283 43.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.5e-62 244.2 287 42.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.0e-62 243.8 291 42.6
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.0e-62 243.8 290 43.1
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.0e-62 243.8 297 42.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.6e-62 243.4 297 42.8
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.6e-62 243.4 297 42.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.6e-62 243.4 293 43.7
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.6e-62 243.4 272 42.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.6e-62 243.4 321 39.6
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.4e-62 243.0 300 42.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 3.4e-62 243.0 297 43.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.4e-62 243.0 283 43.5
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.4e-62 243.0 290 43.4
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 5.7e-62 242.3 305 41.0
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.7e-62 242.3 286 43.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 5.7e-62 242.3 293 43.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 7.5e-62 241.9 297 43.1
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 9.8e-62 241.5 297 42.8
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 9.8e-62 241.5 297 42.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-61 241.1 300 42.0
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-61 241.1 297 42.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.3e-61 241.1 321 38.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.3e-61 241.1 321 38.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.7e-61 240.7 297 42.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.2e-61 240.4 297 42.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.8e-61 240.0 297 42.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.8e-61 240.0 299 42.8
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.8e-61 240.0 297 42.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.8e-61 240.0 300 42.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.7e-61 239.6 299 42.5
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.7e-61 239.6 297 43.1
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 8.3e-61 238.4 295 43.1
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-60 238.0 286 44.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.1e-60 238.0 300 42.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.8e-60 237.3 299 41.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.4e-60 236.9 327 42.2
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.4e-60 236.9 288 41.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 3.1e-60 236.5 300 42.3
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.1e-60 236.1 298 41.9
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.2e-59 234.6 298 41.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.6e-59 234.2 295 41.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.0e-59 233.8 298 42.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.7e-59 233.4 298 41.3
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.5e-59 232.6 298 41.6
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.3e-58 231.1 299 41.8
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-58 230.7 297 41.8
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.8e-58 229.6 273 42.5
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-56 223.8 291 39.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.7e-56 222.6 285 42.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.7e-54 215.7 273 41.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 7.5e-54 215.3 302 39.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.3e-53 212.2 317 38.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-52 211.1 254 43.3
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.4e-52 210.3 286 40.2
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-52 209.5 172 60.5
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.0e-47 193.0 293 38.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.2e-47 192.6 287 39.7
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-46 191.0 203 47.3
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-45 187.6 287 39.4
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.3e-45 185.3 287 39.7
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.0e-43 179.1 293 36.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-39 168.3 292 36.6
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-39 167.9 311 35.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-38 164.5 298 33.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.5e-38 162.2 148 58.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.2e-36 156.8 299 36.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-33 148.3 289 34.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.5e-33 147.9 193 38.9
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.9e-33 147.5 189 41.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.1e-32 142.1 101 64.4
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.1e-31 141.7 230 35.2
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-31 141.4 311 33.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.0e-31 139.8 212 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-30 138.3 148 45.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.4e-30 136.3 202 38.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.8e-30 136.0 190 40.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.3e-29 132.1 140 41.4
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-26 124.0 144 46.5
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.9e-26 123.2 325 30.5
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.1e-26 122.9 146 45.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.6e-26 122.1 150 47.3
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.2e-24 115.9 149 46.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-23 115.2 120 50.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.2e-23 112.8 331 27.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 8.4e-21 105.5 334 28.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.4e-21 105.5 234 31.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.4e-20 104.8 304 27.6
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.9e-20 104.4 196 34.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.6e-19 101.3 117 47.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.7e-19 100.5 119 47.9
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.6e-16 91.3 76 47.4
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 6.2e-16 89.4 296 27.7
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 9.3e-12 75.5 80 48.8
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-10 70.5 171 31.0
MCO08G244 Micromonas commoda HOM05D037687 ORTHO05D049127 7.3e-09 65.9 215 28.4
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.4e-07 61.6 74 43.2
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 4.5e-06 56.6 315 23.2


User provided reference genes

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