Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 0.0e+00 1122.8 560 100.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.8e-190 669.8 497 68.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-190 668.3 491 67.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.3e-144 516.2 530 50.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.2e-31 141.4 586 24.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 3.5e-29 134.0 528 25.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.0e-28 130.2 488 25.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.6e-28 129.4 498 25.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.5e-27 128.6 526 24.7
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.5e-27 128.6 528 25.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.9e-27 128.3 533 24.8
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.2e-27 127.1 528 23.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.6e-26 124.0 498 24.9
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.6e-26 124.0 529 24.6
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 8.0e-26 122.9 530 24.3
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.4e-25 122.1 313 30.4
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.8e-25 121.7 519 25.0
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-25 120.9 500 24.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 3.0e-25 120.9 500 24.0
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.0e-25 120.9 319 29.2
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.0e-25 120.6 312 29.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 8.9e-25 119.4 312 29.5
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.2e-24 119.0 546 24.0
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.0e-24 118.2 528 24.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.6e-24 117.9 312 29.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 3.4e-24 117.5 312 29.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 4.4e-24 117.1 284 29.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.4e-24 117.1 284 29.9
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.7e-24 116.7 522 23.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.7e-24 116.7 319 27.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.7e-24 116.7 320 28.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.3e-23 115.5 311 29.3
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-23 115.5 497 23.9
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.3e-23 115.5 311 29.9
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-23 115.2 313 30.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.2e-23 114.8 312 28.5
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.2e-23 114.8 312 28.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.8e-23 114.4 318 28.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.8e-23 114.4 312 28.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.7e-23 114.0 312 29.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 3.7e-23 114.0 314 28.7
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.9e-23 113.6 318 28.3
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 6.3e-23 113.2 312 27.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 6.3e-23 113.2 312 27.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.3e-23 113.2 312 28.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 8.3e-23 112.8 312 27.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.3e-23 112.8 312 28.5
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 8.3e-23 112.8 318 28.0
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 8.3e-23 112.8 318 28.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.1e-22 112.5 318 28.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-22 112.5 321 28.0
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.4e-22 112.1 312 27.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.4e-22 112.1 312 28.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.4e-22 112.1 312 28.5
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.8e-22 111.7 286 28.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.8e-22 111.7 286 28.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.4e-22 111.3 286 29.0
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.4e-22 111.3 312 28.5
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.4e-22 111.3 283 29.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.4e-22 111.3 319 28.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.1e-22 110.9 286 29.0
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.1e-22 110.9 318 29.2
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.1e-22 110.5 314 28.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 4.1e-22 110.5 318 28.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 4.1e-22 110.5 312 28.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.1e-22 110.5 286 28.7
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 5.4e-22 110.2 312 27.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 5.4e-22 110.2 312 28.2
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 5.4e-22 110.2 318 27.7
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.4e-22 110.2 312 27.9
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.4e-22 110.2 312 28.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 7.0e-22 109.8 307 29.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 9.2e-22 109.4 312 27.6
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 9.2e-22 109.4 312 28.2
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 9.2e-22 109.4 312 28.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 9.2e-22 109.4 318 27.7
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 9.2e-22 109.4 312 28.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 9.2e-22 109.4 315 28.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 9.2e-22 109.4 315 28.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.2e-21 109.0 312 27.2
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-21 109.0 312 27.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.2e-21 109.0 318 28.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.2e-21 109.0 312 28.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-21 109.0 312 28.2
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.2e-21 109.0 318 28.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.2e-21 109.0 321 27.4
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-21 108.6 311 30.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.0e-21 108.2 312 28.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-21 108.2 313 29.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.7e-21 107.8 312 28.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.7e-21 107.8 283 28.6
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.7e-21 107.8 318 28.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.5e-21 107.5 216 31.9
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.5e-21 107.5 312 28.2
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.5e-21 107.5 312 28.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.5e-21 107.1 312 29.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.5e-21 107.1 216 31.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.5e-21 107.1 312 27.9
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.5e-21 107.1 289 28.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.5e-21 107.1 312 27.6
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.5e-21 107.1 317 27.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 5.9e-21 106.7 315 27.9
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.9e-21 106.7 283 28.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.9e-21 106.7 284 29.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 7.8e-21 106.3 312 28.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-20 105.9 298 28.5
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.0e-20 105.9 522 23.4
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.0e-20 105.9 289 28.4
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-20 105.5 266 28.9
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-20 105.5 313 28.1
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.3e-20 105.5 267 29.2
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.7e-20 105.1 312 27.6
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.7e-20 105.1 312 27.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.3e-20 104.8 321 27.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.3e-20 104.8 313 29.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.3e-20 104.8 312 28.2
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.9e-20 104.4 320 27.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.9e-20 104.4 312 27.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-20 104.4 314 27.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-20 104.4 321 26.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.9e-20 104.4 284 28.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.0e-20 103.6 312 27.6
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.0e-20 103.6 320 27.5
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.6e-20 103.2 302 28.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.6e-20 103.2 307 29.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 8.6e-20 102.8 324 25.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 8.6e-20 102.8 312 28.2
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 8.6e-20 102.8 284 28.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-19 102.4 318 26.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.1e-19 102.4 283 28.6
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.1e-19 102.4 312 26.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-19 102.4 285 28.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.5e-19 102.1 318 26.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.9e-19 101.7 318 26.4
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.9e-19 101.7 284 28.9
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.5e-19 101.3 318 26.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.3e-19 100.9 286 27.6
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 7.3e-19 99.8 295 27.5
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.6e-18 98.6 312 27.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.6e-18 98.6 312 27.2
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.1e-18 98.2 260 28.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 8.0e-18 96.3 302 26.5
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.8e-17 95.1 318 28.0
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.8e-17 95.1 309 29.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.3e-17 94.7 312 27.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 8.9e-17 92.8 318 28.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 5.8e-16 90.1 175 34.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-15 89.0 134 36.6
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.7e-15 87.4 175 33.7
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 4.9e-15 87.0 148 35.8
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.9e-14 85.1 142 32.4
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 3.2e-14 84.3 149 34.2
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 5.4e-14 83.6 186 31.2
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 6.8e-09 66.6 310 24.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.7e-07 62.0 237 24.5


User provided reference genes

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