Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 5.1e-87 324.3 157 100.0
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 3.1e-60 235.3 151 72.2
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 3.1e-60 235.3 151 72.2
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 6.9e-60 234.2 153 70.6
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.6e-59 232.3 155 70.3
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 5.9e-59 231.1 153 70.6
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 1.0e-58 230.3 151 72.2
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.3e-58 229.9 148 73.6
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 2.2e-58 229.2 155 67.7
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 2.2e-58 229.2 151 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 2.9e-58 228.8 154 72.1
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 2.9e-58 228.8 151 70.9
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 2.9e-58 228.8 151 70.9
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 2.9e-58 228.8 151 70.9
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 3.8e-58 228.4 151 70.2
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 3.8e-58 228.4 151 70.9
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 3.8e-58 228.4 151 70.9
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 6.5e-58 227.6 148 70.9
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 6.5e-58 227.6 151 68.2
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 8.5e-58 227.3 155 69.0
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 8.5e-58 227.3 155 67.7
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.1e-57 226.9 148 72.3
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.4e-57 226.5 150 71.3
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.4e-57 226.5 151 69.5
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 1.9e-57 226.1 155 68.4
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 2.5e-57 225.7 151 70.9
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 2.5e-57 225.7 151 70.9
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 2.5e-57 225.7 151 70.2
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 2.5e-57 225.7 155 67.1
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.2e-57 225.3 151 69.5
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 3.2e-57 225.3 151 70.2
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 4.2e-57 224.9 152 70.4
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 4.2e-57 224.9 152 68.4
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.2e-57 224.9 155 67.1
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 4.2e-57 224.9 155 67.7
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 5.5e-57 224.6 150 70.7
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 7.2e-57 224.2 155 67.7
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 7.2e-57 224.2 148 70.9
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 7.2e-57 224.2 154 68.2
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 9.3e-57 223.8 155 67.7
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 9.3e-57 223.8 151 68.2
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 9.3e-57 223.8 151 68.2
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 1.2e-56 223.4 151 69.5
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 1.6e-56 223.0 151 67.5
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 2.1e-56 222.6 151 70.2
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.7e-56 222.2 155 67.1
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.7e-56 222.2 155 67.1
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 2.7e-56 222.2 150 68.7
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 3.6e-56 221.9 155 66.5
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 4.6e-56 221.5 154 68.2
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 4.6e-56 221.5 155 64.5
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 4.6e-56 221.5 151 69.5
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 6.1e-56 221.1 151 68.2
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 6.1e-56 221.1 152 69.7
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 6.1e-56 221.1 151 67.5
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 7.9e-56 220.7 148 69.6
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.0e-55 220.3 151 69.5
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 1.3e-55 219.9 155 66.5
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 2.3e-55 219.2 152 68.4
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 2.3e-55 219.2 152 67.8
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 2.3e-55 219.2 152 67.8
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 2.3e-55 219.2 148 67.6
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 3.0e-55 218.8 151 67.5
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 3.0e-55 218.8 150 66.7
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 8.7e-55 217.2 148 68.2
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.1e-54 216.9 153 67.3
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.1e-54 216.9 153 67.3
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.5e-54 215.7 148 69.6
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 4.3e-54 214.9 151 66.9
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 2.2e-53 212.6 151 67.5
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 2.2e-53 212.6 162 63.6
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 2.8e-53 212.2 151 66.2
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 3.7e-53 211.8 151 66.9
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 3.7e-53 211.8 147 68.0
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 4.8e-53 211.5 151 66.9
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 6.3e-53 211.1 148 67.6
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 1.1e-52 210.3 150 66.7
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 1.8e-52 209.5 151 65.6
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 1.8e-52 209.5 155 64.5
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 1.8e-52 209.5 151 66.2
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 5.3e-52 208.0 186 56.5
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 6.9e-52 207.6 155 63.2
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 2.0e-51 206.1 151 65.6
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 2.0e-51 206.1 153 64.1
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 2.6e-51 205.7 147 66.0
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 3.4e-51 205.3 148 66.2
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 4.5e-51 204.9 151 65.6
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 4.5e-51 204.9 155 62.6
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 7.7e-51 204.1 151 63.6
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 7.7e-51 204.1 151 63.6
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 7.7e-51 204.1 148 65.5
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 7.7e-51 204.1 151 64.2
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 7.7e-51 204.1 153 62.7
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 7.7e-51 204.1 153 62.1
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 1.0e-50 203.8 155 62.6
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 1.7e-50 203.0 154 61.7
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.9e-50 202.2 148 65.5
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.8e-50 201.8 152 62.5
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.4e-49 199.9 155 60.6
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 1.4e-49 199.9 153 62.7
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 1.4e-49 199.9 153 64.7
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 2.5e-49 199.1 147 64.6
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 3.2e-49 198.7 151 62.3
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 4.2e-49 198.4 151 62.9
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 9.4e-49 197.2 137 65.7
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 9.4e-49 197.2 137 65.7
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 9.4e-49 197.2 151 62.9
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 4.6e-48 194.9 150 62.7
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.4e-47 193.4 179 55.9
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 2.0e-46 189.5 151 61.6
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 4.5e-43 178.3 135 64.4
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.3e-42 176.8 140 62.1
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 8.5e-42 174.1 139 59.7
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 4.2e-41 171.8 112 67.0
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.6e-40 168.7 174 51.1
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 7.9e-40 167.5 152 59.2
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 1.4e-39 166.8 104 72.1
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.7e-37 158.7 108 66.7
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 2.6e-30 136.0 87 74.7
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 4.8e-29 131.7 151 48.3
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.7e-26 123.2 129 51.2
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.9e-26 122.5 87 66.7
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.1e-24 114.8 82 67.1
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.2e-19 100.5 66 69.7
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 6.5e-18 94.7 87 50.6
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 4.7e-16 88.6 64 59.4
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.0e-15 87.4 64 59.4
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 2.0e-11 73.2 44 68.2
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 5.0e-10 68.6 43 69.8
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 5.2e-07 58.5 42 64.3
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 6.8e-07 58.2 45 62.2


User provided reference genes

Program Settings