Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.5e-167 592.0 299 100.0
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.3e-75 287.3 239 61.5
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.4e-72 277.3 221 65.2
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.0e-71 273.5 194 69.1
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 4.4e-71 272.3 192 67.2
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 5.7e-71 271.9 194 68.6
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 5.7e-71 271.9 194 68.6
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 5.7e-71 271.9 207 65.2
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 5.7e-71 271.9 195 66.7
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 2.8e-70 269.6 195 66.7
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 3.7e-70 269.2 192 67.2
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.7e-70 269.2 195 68.2
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 6.3e-70 268.5 195 66.7
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 8.2e-70 268.1 195 66.2
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.4e-69 266.5 192 66.1
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 4.1e-69 265.8 192 66.7
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 7.0e-69 265.0 195 66.2
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 7.0e-69 265.0 192 67.2
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 9.1e-69 264.6 192 66.1
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 9.1e-69 264.6 192 67.2
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.2e-68 264.2 262 57.6
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 1.6e-68 263.8 197 66.5
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.6e-68 263.8 192 67.2
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.0e-68 263.5 262 56.9
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 2.0e-68 263.5 195 65.6
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 2.0e-68 263.5 192 66.7
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 2.0e-68 263.5 195 65.6
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 2.0e-68 263.5 196 64.8
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 2.6e-68 263.1 197 66.5
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 3.5e-68 262.7 184 68.5
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 3.5e-68 262.7 196 65.8
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.5e-68 262.7 192 65.6
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 4.5e-68 262.3 192 66.7
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.9e-68 261.9 194 66.0
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 7.7e-68 261.5 196 65.3
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 7.7e-68 261.5 197 66.5
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.0e-67 261.2 192 66.1
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 1.3e-67 260.8 192 65.6
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 1.3e-67 260.8 227 59.0
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 2.2e-67 260.0 196 64.8
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 2.2e-67 260.0 195 64.6
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 2.9e-67 259.6 192 65.1
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 2.9e-67 259.6 195 64.1
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 3.8e-67 259.2 195 63.1
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 5.0e-67 258.8 196 65.3
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 5.0e-67 258.8 195 63.6
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 5.0e-67 258.8 194 63.4
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 6.5e-67 258.5 196 65.8
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 6.5e-67 258.5 196 65.8
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 6.5e-67 258.5 197 64.5
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.1e-66 257.7 196 65.3
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.1e-66 257.7 195 65.1
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.1e-66 257.7 194 62.9
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 1.9e-66 256.9 196 65.3
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 2.5e-66 256.5 192 64.1
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 3.2e-66 256.1 192 65.6
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 3.2e-66 256.1 192 64.1
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 4.2e-66 255.8 228 57.0
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 4.2e-66 255.8 176 67.6
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 4.2e-66 255.8 187 66.3
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 7.2e-66 255.0 228 58.8
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 9.4e-66 254.6 196 64.8
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.6e-65 253.8 263 56.7
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 2.1e-65 253.4 238 58.4
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 3.6e-65 252.7 192 64.1
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 6.1e-65 251.9 192 63.0
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 1.0e-64 251.1 205 60.0
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 1.4e-64 250.8 186 66.1
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.8e-64 250.4 186 66.1
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 4.0e-64 249.2 203 62.6
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 5.2e-64 248.8 229 57.6
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.0e-63 246.9 267 52.8
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.6e-63 246.5 192 62.5
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 4.4e-63 245.7 189 61.4
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 7.5e-63 245.0 187 62.0
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 1.7e-62 243.8 189 65.6
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 5.3e-61 238.8 228 55.3
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 7.0e-61 238.4 259 49.0
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.2e-60 237.7 190 62.1
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 2.7e-60 236.5 166 65.1
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.9e-59 233.0 198 60.1
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 5.0e-59 232.3 196 60.7
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 6.5e-59 231.9 175 64.6
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 3.2e-58 229.6 191 60.7
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.7e-57 226.5 196 60.2
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 4.7e-57 225.7 191 58.6
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 6.1e-57 225.3 191 58.1
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 8.0e-57 224.9 191 58.6
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 3.0e-56 223.0 200 59.5
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 5.2e-56 222.2 184 62.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 2.6e-55 219.9 173 63.6
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.3e-54 217.6 189 59.8
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.1e-53 214.5 175 62.3
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 3.1e-53 213.0 208 53.8
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 4.1e-53 212.6 185 56.2
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 7.0e-53 211.8 153 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.2e-52 211.1 166 63.9
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.7e-51 207.2 160 63.8
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.2e-49 201.1 168 61.9
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 1.4e-48 197.6 127 73.2
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.3e-48 196.8 179 52.5
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 4.0e-48 196.1 244 46.3
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 5.2e-48 195.7 130 73.1
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 7.5e-47 191.8 152 62.5
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 1.4e-45 187.6 130 67.7
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 9.2e-45 184.9 181 51.4
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.1e-37 159.5 105 75.2
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 4.1e-37 159.5 141 58.2
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 7.3e-34 148.7 140 54.3
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 4.0e-32 142.9 81 79.0
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 5.2e-32 142.5 81 80.2
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 1.3e-30 137.9 182 44.0
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.9e-29 134.0 76 80.3
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 2.3e-27 127.1 194 43.3
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 8.3e-22 108.6 116 41.4
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.4e-21 107.8 93 54.8
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 4.1e-21 106.3 63 77.8
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 4.6e-20 102.8 58 81.0
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 6.0e-20 102.4 117 46.2
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 3.5e-12 76.6 58 63.8
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.0e-11 75.1 45 73.3
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 9.6e-10 68.6 44 68.2
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 1.2e-07 61.6 95 41.1
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.6e-07 60.5 52 53.8
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 5.8e-07 59.3 46 63.0
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 9.9e-07 58.5 41 68.3
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 6.4e-06 55.8 44 61.4


User provided reference genes

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