Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.3e-258 896.0 464 100.0
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-255 885.2 458 99.8
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.7e-149 531.9 487 58.7
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.6e-128 462.2 459 52.9
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.9e-124 448.4 464 53.9
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.9e-124 448.4 464 53.9
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 2.0e-102 377.1 457 46.2
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.8e-101 373.2 460 44.8
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.5e-86 324.3 461 40.8
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.4e-84 317.8 459 41.0
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 6.1e-80 302.4 460 37.6
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.3e-79 300.4 447 39.1
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 5.7e-78 295.8 460 38.0
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 7.5e-78 295.4 460 36.7
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 1.7e-77 294.3 458 37.1
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.7e-77 294.3 446 38.8
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 6.3e-77 292.4 460 37.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.1e-76 290.0 448 38.4
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 5.9e-75 285.8 460 37.6
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 2.2e-74 283.9 457 38.1
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 6.5e-74 282.3 447 37.1
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 1.1e-73 281.6 459 36.8
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 1.1e-73 281.6 462 37.0
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.5e-73 281.2 458 36.5
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.5e-73 281.2 461 37.7
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 2.5e-73 280.4 460 38.5
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 7.2e-73 278.9 460 37.2
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 7.2e-73 278.9 458 36.2
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 7.2e-73 278.9 447 37.1
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 9.5e-73 278.5 458 36.2
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 2.1e-72 277.3 446 36.5
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 3.6e-72 276.6 447 36.2
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 4.7e-72 276.2 448 35.3
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 6.1e-72 275.8 461 36.9
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.4e-71 274.6 458 35.8
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 1.8e-71 274.2 447 38.3
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 1.8e-71 274.2 463 35.2
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 1.8e-71 274.2 456 37.5
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 2.3e-71 273.9 448 35.7
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 4.0e-71 273.1 447 38.3
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 4.0e-71 273.1 460 37.6
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 8.8e-71 271.9 448 35.9
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 8.8e-71 271.9 447 36.0
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.2e-70 271.6 462 35.7
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.5e-70 271.2 463 36.1
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.5e-70 271.2 450 36.2
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 2.6e-70 270.4 460 35.9
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 3.4e-70 270.0 457 36.5
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 5.7e-70 269.2 457 36.5
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 5.7e-70 269.2 452 35.6
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.8e-69 266.9 457 36.3
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 2.8e-69 266.9 458 36.7
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 2.8e-69 266.9 450 36.7
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 4.9e-69 266.2 460 36.3
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 3.1e-68 263.5 452 36.1
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 5.4e-68 262.7 451 36.4
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 5.4e-68 262.7 457 36.5
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 1.2e-67 261.5 461 34.9
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 1.2e-67 261.5 461 35.6
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 2.7e-67 260.4 452 36.3
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 3.5e-67 260.0 446 36.3
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 7.7e-67 258.8 463 36.3
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 1.7e-66 257.7 461 34.9
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.9e-66 256.9 441 35.6
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 6.6e-66 255.8 457 35.7
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 8.6e-66 255.4 457 35.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 1.1e-65 255.0 459 34.6
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.1e-65 255.0 444 34.2
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 2.5e-65 253.8 458 34.7
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 3.3e-65 253.4 456 35.5
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 4.7e-64 249.6 450 35.1
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 8.0e-64 248.8 462 33.8
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.8e-60 237.7 381 36.7
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 5.4e-60 236.1 448 34.8
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 2.7e-59 233.8 567 30.0
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 4.6e-59 233.0 447 33.3
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 7.8e-59 232.3 460 32.6
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 5.6e-57 226.1 449 33.4
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 9.5e-57 225.3 402 34.6
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 1.6e-56 224.6 402 34.3
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 1.6e-56 224.6 402 34.3
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 2.1e-56 224.2 402 34.3
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 8.0e-56 222.2 420 33.8
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 3.1e-55 220.3 402 33.8
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 8.9e-55 218.8 538 30.3
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.5e-54 218.0 457 31.9
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 2.0e-54 217.6 402 33.3
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 4.4e-54 216.5 402 33.1
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 4.4e-54 216.5 409 33.7
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 4.1e-52 209.9 399 31.8
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.8e-51 205.7 372 33.6
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.3e-49 199.1 354 34.5
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.6e-40 171.4 248 40.3
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 4.6e-35 153.3 298 32.2
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 9.6e-33 145.6 287 32.1
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.6e-32 144.8 300 33.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.1e-27 127.9 153 44.4
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.7e-27 127.5 236 31.4
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 6.0e-27 126.3 419 27.0
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.2e-22 112.1 291 28.5
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.4e-20 103.2 219 28.3
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.3e-18 98.6 423 26.2
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 9.0e-15 85.9 98 46.9
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.6e-14 84.3 123 39.8
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.2e-11 75.5 143 37.8
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 4.6e-11 73.6 64 54.7
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 3.9e-10 70.5 123 30.1
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.1e-09 68.9 123 31.7
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 3.3e-09 67.4 113 33.6
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 8.2e-08 62.8 65 44.6
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 1.5e-06 58.5 87 37.9
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 1.5e-06 58.5 87 37.9


User provided reference genes

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