Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 3.6e-166 588.2 303 100.0
Mapoly0024s0002 Marchantia polymorpha HOM05D019249 ORTHO05D019657 5.1e-51 205.7 209 51.2
Pp3c17_17050 Physcomitrium patens HOM05D019249 ORTHO05D019657 9.6e-42 174.9 268 39.2
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 1.4e-40 171.0 192 44.8
SEGI_07088 Sequoiadendron giganteum HOM05D019249 ORTHO05D019657 2.4e-37 160.2 188 43.1
Pp3c14_15750 Physcomitrium patens HOM05D019249 ORTHO05D019657 3.3e-26 123.2 154 42.9
MCO16G481 Micromonas commoda HOM05D019249 ORTHO05D019657 2.5e-13 80.5 201 29.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 3.0e-11 73.6 215 23.3
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 8.8e-11 72.0 209 23.4
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.5e-10 71.2 214 24.3
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.5e-10 71.2 207 25.1
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.6e-10 70.5 207 25.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.3e-10 70.1 201 25.4
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.3e-10 70.1 245 26.5
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 4.4e-10 69.7 209 23.0
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.7e-10 69.3 213 25.4
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 7.4e-10 68.9 169 25.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 7.4e-10 68.9 203 25.1
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-09 67.8 203 24.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-09 67.8 203 22.7
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.7e-09 66.6 201 23.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 8.2e-09 65.5 202 24.8
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.4e-08 64.7 185 25.4
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-08 64.3 209 23.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.8e-08 64.3 173 23.1
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.4e-08 63.9 266 25.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.4e-08 63.9 206 22.3
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.4e-08 63.9 181 23.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.1e-08 63.2 209 24.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 4.1e-08 63.2 172 27.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.3e-08 62.8 230 23.5
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.3e-08 62.8 243 22.2
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.3e-08 62.8 236 24.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.0e-08 62.4 209 23.9
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 9.1e-08 62.0 254 22.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 9.1e-08 62.0 214 23.4
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 9.1e-08 62.0 189 24.3
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.5e-07 61.2 201 21.4
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.0e-07 60.8 227 24.2
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-07 60.5 227 24.2
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.6e-07 60.5 227 24.2
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.6e-07 60.5 227 24.2
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.4e-07 60.1 184 23.4
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.4e-07 60.1 224 24.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 3.4e-07 60.1 201 24.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.0e-06 58.5 208 23.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-06 58.2 209 22.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.2e-06 57.4 224 22.3


User provided reference genes

Program Settings