Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 3.3e-75 285.0 153 100.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.8e-49 199.5 147 70.7
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.4e-49 199.1 149 67.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.4e-49 199.1 138 72.5
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.7e-47 193.0 143 68.5
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 2.8e-42 175.6 149 61.1
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 7.0e-41 171.0 149 60.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.6e-40 169.9 139 64.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.0e-40 169.5 141 61.7
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.0e-40 169.5 139 61.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.0e-40 169.5 146 60.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.0e-40 169.5 146 60.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.7e-40 169.1 137 65.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.5e-40 168.7 136 65.4
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-40 168.7 136 64.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 4.5e-40 168.3 143 61.5
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.5e-40 168.3 138 63.8
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 4.5e-40 168.3 146 60.3
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.5e-40 168.3 149 58.4
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 5.9e-40 167.9 136 64.0
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 7.7e-40 167.5 147 59.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.7e-40 167.5 136 61.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 7.7e-40 167.5 138 62.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 7.7e-40 167.5 137 62.8
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.0e-39 167.2 136 62.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.0e-39 167.2 141 62.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.0e-39 167.2 139 62.6
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.3e-39 166.8 146 61.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.3e-39 166.8 141 61.7
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.7e-39 166.4 139 62.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.7e-39 166.4 142 60.6
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-39 166.0 136 61.8
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.3e-39 166.0 138 62.3
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.3e-39 166.0 147 58.5
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.9e-39 165.6 138 63.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.9e-39 165.6 138 63.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.9e-39 165.6 138 63.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-39 165.6 135 62.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.9e-39 165.6 138 61.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.8e-39 165.2 136 61.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.8e-39 165.2 136 64.0
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.0e-39 164.9 138 60.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.0e-39 164.9 141 58.9
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 6.6e-39 164.5 136 61.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.6e-39 164.5 143 59.4
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.6e-39 164.1 144 62.5
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.1e-38 163.7 139 62.6
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-38 163.7 136 59.6
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-38 163.7 136 60.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.5e-38 163.3 138 61.6
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.5e-38 163.3 138 60.9
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.5e-38 163.3 152 60.5
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.5e-38 163.3 137 63.5
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.9e-38 162.9 136 63.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.9e-38 162.9 138 60.1
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.9e-38 162.9 136 64.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.9e-38 162.9 138 60.1
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.5e-38 162.5 144 58.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.5e-38 162.5 138 61.6
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.3e-38 162.2 141 61.0
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 3.3e-38 162.2 138 60.1
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-38 161.8 136 60.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.3e-38 161.8 136 63.2
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 7.3e-38 161.0 141 61.0
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 7.3e-38 161.0 135 63.7
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.3e-38 161.0 140 58.6
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 7.3e-38 161.0 132 62.1
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 7.3e-38 161.0 147 60.5
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 9.5e-38 160.6 144 58.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 9.5e-38 160.6 145 57.2
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 9.5e-38 160.6 145 57.2
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 9.5e-38 160.6 138 60.9
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 9.5e-38 160.6 138 60.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 9.5e-38 160.6 148 56.8
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.2e-37 160.2 146 58.9
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.2e-37 160.2 138 59.4
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.6e-37 159.8 145 57.2
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.6e-37 159.8 138 59.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.6e-37 159.8 144 59.0
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.1e-37 159.5 137 60.6
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.1e-37 159.5 144 58.3
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.1e-37 159.5 141 62.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.1e-37 159.5 138 59.4
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.8e-37 159.1 136 59.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.8e-37 159.1 136 59.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.8e-37 159.1 136 59.6
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.8e-37 159.1 153 56.9
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.8e-37 159.1 138 60.1
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.8e-37 159.1 144 58.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.6e-37 158.7 136 58.8
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 3.6e-37 158.7 135 59.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.7e-37 158.3 144 57.6
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.1e-37 157.9 144 57.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.1e-37 157.9 143 57.3
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-36 156.8 136 58.8
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.4e-36 156.8 136 58.8
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-36 155.2 116 69.0
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.2e-36 154.8 136 58.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 6.8e-36 154.5 121 67.8
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-35 153.3 136 58.1
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-35 153.3 115 68.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-35 153.3 115 68.7
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.0e-35 152.9 174 50.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-35 152.9 136 58.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-35 152.9 115 68.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.6e-35 152.5 125 64.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-35 152.5 115 68.7
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.4e-35 152.1 115 69.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.4e-35 152.1 145 56.6
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.4e-35 152.1 145 55.9
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.3e-34 150.2 146 54.8
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.3e-34 150.2 116 69.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.7e-34 149.8 118 66.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.2e-34 149.4 126 59.5
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-34 148.7 115 67.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-34 148.3 136 56.6
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 6.4e-34 147.9 116 64.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 6.4e-34 147.9 115 66.1
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 8.3e-34 147.5 121 63.6
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 8.3e-34 147.5 118 66.9
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 8.3e-34 147.5 115 66.1
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-33 147.1 138 55.1
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.8e-33 146.4 115 64.3
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.8e-33 146.4 120 62.5
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.2e-33 145.6 115 64.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 9.2e-33 144.1 115 64.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.2e-33 144.1 114 64.9
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-32 143.3 115 66.1
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 5.9e-32 141.4 120 59.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.3e-31 140.2 137 51.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.7e-31 139.8 189 46.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 9.5e-30 134.0 151 49.0
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.7e-29 131.7 143 51.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.2e-29 131.3 108 60.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.2e-29 131.3 108 60.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.2e-29 131.3 141 51.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 4.0e-28 128.6 164 47.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.2e-27 127.1 151 41.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.4e-27 125.6 85 70.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.9e-25 119.8 166 46.4
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.7e-24 115.9 88 69.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.6e-23 111.3 93 62.4
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-21 106.7 87 65.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 2.0e-19 99.8 90 64.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 9.8e-19 97.4 200 35.0
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.7e-18 96.7 133 38.3
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-16 90.5 71 69.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-16 90.5 71 69.0
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.7e-16 89.4 69 66.7
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-16 87.8 71 66.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.3e-15 86.3 134 33.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 6.6e-15 84.7 72 55.6
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 8.6e-15 84.3 77 58.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.5e-14 82.8 65 69.2
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.1e-13 77.8 63 65.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.2e-11 73.9 59 59.3
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-11 73.6 59 59.3
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-11 72.8 59 57.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.5e-08 62.4 66 54.5
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.3e-07 59.7 66 53.0
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-06 57.4 54 55.6
Pp3c17_13260 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.5e-06 57.0 55 63.6


User provided reference genes

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