Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 6.4e-154 547.4 274 100.0
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 5.0e-106 388.3 271 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.9e-97 359.8 271 67.9
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 4.2e-97 358.6 273 66.3
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 9.8e-94 347.4 251 69.3
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.3e-93 347.1 250 69.6
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.8e-93 345.9 251 68.9
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.4e-92 343.6 251 68.9
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 2.4e-92 342.8 250 67.6
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 3.1e-92 342.4 250 68.0
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.1e-92 342.4 251 68.5
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.4e-92 341.7 247 68.0
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 7.0e-92 341.3 251 68.1
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 9.2e-92 340.9 251 66.9
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.6e-91 340.1 251 68.5
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.6e-91 340.1 251 68.1
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.6e-91 340.1 251 68.1
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 2.7e-91 339.3 251 67.7
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 2.7e-91 339.3 250 67.2
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.7e-91 339.3 251 69.3
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.5e-91 339.0 251 67.7
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 3.5e-91 339.0 251 68.9
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 4.5e-91 338.6 247 68.8
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 4.5e-91 338.6 251 67.7
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 5.9e-91 338.2 247 68.8
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 7.8e-91 337.8 247 67.2
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 1.0e-90 337.4 247 68.4
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 1.0e-90 337.4 251 67.3
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.0e-90 337.4 251 67.3
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.7e-90 336.7 251 66.1
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.3e-90 336.3 247 67.6
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 2.9e-90 335.9 251 67.7
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 2.9e-90 335.9 247 68.0
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 2.9e-90 335.9 247 68.0
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 5.0e-90 335.1 251 66.5
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.6e-90 334.7 251 66.9
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.6e-90 334.7 251 66.9
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 1.1e-89 334.0 251 64.5
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 1.1e-89 334.0 251 64.5
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.5e-89 333.6 247 66.8
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.9e-89 333.2 250 66.8
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 1.9e-89 333.2 250 66.4
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 2.5e-89 332.8 247 66.8
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.3e-89 332.4 251 64.5
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 3.3e-89 332.4 251 66.1
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 4.3e-89 332.0 247 66.8
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.1
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.1
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.1
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.1
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.1
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 66.1
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.5
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.3e-89 332.0 251 64.5
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 5.6e-89 331.6 252 65.9
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 5.6e-89 331.6 232 71.1
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 7.3e-89 331.3 251 63.7
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 9.5e-89 330.9 247 66.8
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 9.5e-89 330.9 250 66.0
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.2e-88 330.5 245 68.2
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 1.6e-88 330.1 247 66.8
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.1e-88 329.7 252 64.7
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.1e-88 329.7 247 66.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 2.8e-88 329.3 251 66.1
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.8e-88 329.3 251 64.9
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 3.6e-88 328.9 251 63.3
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 3.6e-88 328.9 250 66.0
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 3.6e-88 328.9 251 65.7
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.6e-88 328.9 251 65.7
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.6e-88 328.9 251 65.7
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.6e-88 328.9 251 65.7
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 3.6e-88 328.9 247 66.8
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 3.6e-88 328.9 247 65.2
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 3.6e-88 328.9 247 66.4
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 6.1e-88 328.2 251 62.9
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 6.1e-88 328.2 251 65.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 6.1e-88 328.2 260 64.6
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.0e-87 327.4 247 66.4
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 8.9e-87 324.3 241 65.1
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 8.9e-87 324.3 247 66.0
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.2e-86 323.9 247 66.4
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.5e-86 323.6 251 64.1
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.5e-86 323.6 251 64.1
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.5e-86 323.6 251 64.1
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.0e-86 323.2 251 65.3
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.0e-86 323.2 251 65.3
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.0e-86 323.2 247 66.8
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 9.8e-86 320.9 249 64.3
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.7e-85 320.1 257 64.6
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.2e-85 319.7 251 64.9
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.2e-85 319.7 245 64.1
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 3.7e-85 318.9 251 64.5
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 3.7e-85 318.9 247 64.8
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.2e-83 313.9 292 57.2
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 1.6e-83 313.5 251 64.9
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.0e-83 313.2 266 60.2
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.7e-83 312.8 266 60.2
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 4.6e-83 312.0 247 62.8
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 7.8e-83 311.2 232 66.4
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.6e-80 303.5 251 62.5
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 4.9e-77 292.0 239 63.2
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.1e-76 290.8 272 58.5
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.7e-74 283.5 218 65.1
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 5.0e-74 282.0 209 65.6
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 4.7e-72 275.4 251 60.2
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.2e-68 261.2 200 64.0
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 3.5e-67 259.2 251 54.2
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 3.9e-66 255.8 247 55.9
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 6.6e-66 255.0 200 64.5
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.2e-59 234.2 255 52.9
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 8.6e-58 228.0 247 47.0
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 4.4e-54 215.7 160 66.2
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 3.8e-53 212.6 164 65.9
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.0e-50 203.0 269 42.8
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 3.3e-49 199.5 147 63.9
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.2e-44 182.6 133 67.7
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.0e-42 177.9 135 66.7
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 4.8e-40 169.1 132 64.4
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 1.4e-36 157.5 202 47.0
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.9e-36 157.1 139 60.4
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.2e-35 154.5 112 67.9
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 3.5e-35 152.9 157 51.6
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.3e-34 150.2 116 65.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 1.3e-32 144.4 105 67.6
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.8e-31 140.6 105 66.7
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.2e-30 137.9 105 63.8
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 2.6e-30 136.7 105 63.8
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 8.4e-29 131.7 105 64.8
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 5.7e-25 119.0 127 51.2
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-24 117.5 91 58.2
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 8.2e-24 115.2 252 34.1
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.5e-17 93.6 103 49.5
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.0e-14 84.0 97 53.6
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.6e-14 83.6 67 61.2
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 6.5e-13 79.0 52 69.2
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.2e-11 74.7 55 61.8
Pp3c14_14240 Physcomitrium patens HOM05D005529 ORTHO05D314065 4.8e-08 62.8 43 81.4


User provided reference genes

Program Settings