Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 9.1e-182 640.2 343 100.0
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.0e-88 330.1 302 61.3
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 3.0e-84 316.2 306 58.5
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 7.0e-81 305.1 306 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 9.1e-81 304.7 341 52.5
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.0e-80 303.5 306 57.5
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.0e-80 303.5 306 57.5
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.6e-80 303.1 306 55.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.0e-79 301.2 304 55.9
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.9e-79 299.7 306 55.2
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.8e-79 299.3 306 54.9
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 3.8e-79 299.3 308 55.8
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 5.0e-79 298.9 306 54.9
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 6.5e-79 298.5 308 55.2
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 6.5e-79 298.5 301 56.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.5e-79 298.1 302 57.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.5e-79 298.1 302 57.3
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.5e-78 297.4 302 57.6
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.9e-78 297.0 311 55.0
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.9e-78 297.0 306 55.2
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.5e-78 296.6 308 54.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 4.2e-78 295.8 304 56.6
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 4.2e-78 295.8 304 56.6
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 4.2e-78 295.8 304 56.6
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 7.2e-78 295.0 304 54.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 9.4e-78 294.7 306 54.6
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.2e-77 294.3 302 55.3
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.2e-77 294.3 304 53.9
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.2e-77 294.3 315 53.0
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.6e-77 293.9 311 55.3
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.1e-77 293.5 309 54.4
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 3.6e-77 292.7 306 54.2
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.7e-77 292.4 311 55.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 4.7e-77 292.4 306 53.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 4.7e-77 292.4 306 53.9
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 6.1e-77 292.0 306 54.9
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.4e-76 290.8 304 55.9
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.3e-76 290.0 309 54.7
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.0e-76 289.7 306 54.2
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 4.0e-76 289.3 304 54.9
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 4.0e-76 289.3 306 54.2
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 8.8e-76 288.1 304 54.6
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 8.8e-76 288.1 306 53.9
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 8.8e-76 288.1 306 54.6
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.2e-75 287.7 304 55.3
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.2e-75 287.7 306 54.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.6e-75 286.6 306 52.9
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 4.4e-75 285.8 308 51.6
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 4.4e-75 285.8 306 52.9
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 4.4e-75 285.8 306 52.9
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.4e-75 285.8 306 52.9
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 5.7e-75 285.4 307 53.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 5.7e-75 285.4 306 52.9
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 7.5e-75 285.0 306 54.2
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.3e-74 284.3 311 54.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.3e-74 284.3 306 55.2
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.7e-74 283.9 306 54.2
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.7e-74 283.9 306 52.0
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.7e-74 283.9 306 55.2
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.2e-74 283.5 302 53.0
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.2e-74 283.5 306 51.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.2e-74 283.5 304 54.3
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.7e-74 282.7 306 52.9
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.4e-73 280.8 306 53.3
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 3.1e-73 279.6 306 54.2
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 3.1e-73 279.6 306 52.6
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 4.1e-73 279.3 306 54.2
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 4.1e-73 279.3 301 54.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.1e-73 279.3 304 53.6
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 7.0e-73 278.5 302 53.0
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 7.0e-73 278.5 306 53.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.1e-73 278.1 302 54.6
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.2e-72 277.7 306 53.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.6e-72 277.3 304 54.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.6e-72 277.3 302 52.6
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.6e-72 277.3 306 50.3
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.0e-72 276.9 304 53.9
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.7e-72 276.6 309 52.4
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.5e-72 276.2 302 53.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.5e-72 275.8 302 53.0
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 4.5e-72 275.8 306 49.7
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 5.9e-72 275.4 302 52.6
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 7.7e-72 275.0 311 50.2
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.9e-71 273.1 302 52.6
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 3.8e-71 272.7 302 51.0
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.8e-71 272.7 316 49.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 5.0e-71 272.3 304 52.6
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 8.5e-71 271.6 302 50.3
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.5e-70 270.8 301 53.5
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.5e-70 270.8 306 52.0
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.5e-70 270.0 306 52.3
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-70 269.6 301 53.5
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.2e-70 269.6 309 50.8
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 7.2e-70 268.5 315 48.3
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 9.4e-70 268.1 293 52.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.2e-69 267.7 302 52.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.0e-68 264.6 293 51.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 3.0e-68 263.1 302 51.0
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.6e-67 260.0 307 49.2
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 3.4e-67 259.6 334 51.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 4.4e-67 259.2 302 50.3
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 7.5e-67 258.5 304 52.3
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.5e-67 258.5 302 51.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.2e-66 256.9 306 52.0
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-64 250.8 293 52.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 5.0e-63 245.7 287 49.5
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.1e-62 244.6 306 48.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.3e-62 243.0 294 48.6
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-61 241.1 293 51.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 3.7e-58 229.6 299 47.5
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.3e-50 204.5 206 53.4
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 5.4e-49 199.1 241 49.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 5.6e-46 189.1 197 56.3
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 4.4e-43 179.5 300 39.3
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.4e-42 175.6 192 50.0
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 5.1e-39 166.0 170 54.1
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.5e-38 161.8 206 50.5
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.1e-36 156.8 214 46.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.9e-34 149.4 157 54.1
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.9e-33 147.5 135 57.8
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.9e-25 120.9 302 34.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 5.4e-25 119.4 195 40.5
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.6e-24 117.9 249 37.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 7.8e-24 115.5 133 48.1
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.8e-21 107.1 308 31.2
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.8e-21 106.3 128 51.6
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.4e-20 104.8 95 60.0
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.0e-20 103.2 172 41.9
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.1e-17 95.1 318 29.9
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.5e-16 90.1 87 52.9
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 4.6e-16 89.7 216 34.7
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.5e-14 84.7 54 68.5
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.6e-13 80.1 86 51.2
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.8e-13 79.7 194 33.5
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.8e-12 77.8 99 48.5
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.0e-07 62.0 85 44.7
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.0e-07 60.5 48 60.4
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 3.3e-06 57.0 64 45.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 7.4e-06 55.8 119 34.5


User provided reference genes

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