Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 5.1e-75 284.3 138 100.0
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 5.0e-46 188.0 127 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 5.2e-43 177.9 128 64.1
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 2.2e-41 172.6 129 62.0
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 8.0e-36 154.1 127 54.3
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 1.8e-35 152.9 127 54.3
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.8e-35 152.9 126 55.6
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.0e-35 152.1 129 56.6
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 6.8e-35 151.0 132 50.0
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-34 150.2 132 50.8
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-34 149.8 132 50.8
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.0e-34 149.4 131 53.4
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 2.6e-34 149.1 132 50.0
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.6e-34 149.1 132 50.0
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.6e-34 149.1 132 50.0
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 4.4e-34 148.3 127 52.8
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 4.4e-34 148.3 132 50.8
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 5.7e-34 147.9 130 53.8
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 9.8e-34 147.1 129 53.5
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 9.8e-34 147.1 132 52.3
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.3e-33 146.7 129 53.5
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.3e-33 146.7 132 51.5
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 1.7e-33 146.4 132 52.3
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.7e-33 146.4 129 52.7
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.7e-33 146.4 129 52.7
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.7e-33 145.2 130 53.8
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 3.7e-33 145.2 132 50.0
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 3.7e-33 145.2 132 51.5
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 4.9e-33 144.8 129 51.9
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 4.9e-33 144.8 129 51.9
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 6.3e-33 144.4 129 53.5
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 8.3e-33 144.1 129 51.2
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 8.3e-33 144.1 132 51.5
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 8.3e-33 144.1 129 53.5
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.1e-32 143.7 132 51.5
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 1.8e-32 142.9 131 49.6
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.8e-32 142.9 131 51.9
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 1.8e-32 142.9 129 49.6
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.8e-32 142.9 125 54.4
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.8e-32 142.9 129 50.4
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.4e-32 142.5 132 50.0
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.4e-32 142.5 129 51.9
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 2.4e-32 142.5 129 51.9
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 2.4e-32 142.5 132 50.8
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 3.1e-32 142.1 129 53.5
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 3.1e-32 142.1 129 51.2
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 4.1e-32 141.7 129 50.4
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 4.1e-32 141.7 132 50.0
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 5.4e-32 141.4 132 50.8
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 5.4e-32 141.4 131 50.4
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 5.4e-32 141.4 129 51.2
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 7.0e-32 141.0 129 51.2
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 7.0e-32 141.0 129 51.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 7.0e-32 141.0 129 50.4
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 9.1e-32 140.6 132 50.0
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 9.1e-32 140.6 133 50.4
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 9.1e-32 140.6 129 49.6
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 9.1e-32 140.6 129 51.9
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.2e-31 140.2 131 48.9
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-31 140.2 129 48.8
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-31 140.2 129 48.8
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.2e-31 140.2 129 51.9
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.7e-31 139.0 133 51.9
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.7e-31 139.0 129 51.9
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 2.7e-31 139.0 124 50.0
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 3.5e-31 138.7 132 50.0
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.5e-31 138.7 130 50.8
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 4.5e-31 138.3 129 48.8
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 5.9e-31 137.9 129 48.8
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.0e-30 137.1 129 51.9
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.3e-30 136.7 129 48.1
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.3e-30 136.7 129 48.8
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 1.7e-30 136.3 129 48.8
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.7e-30 136.3 130 46.9
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 2.9e-30 135.6 133 50.4
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 8.6e-30 134.0 129 49.6
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 1.1e-29 133.7 125 48.8
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.1e-29 133.7 133 49.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.5e-29 133.3 128 48.4
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 2.5e-29 132.5 114 51.8
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 3.3e-29 132.1 130 46.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 3.3e-29 132.1 129 48.1
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 4.2e-29 131.7 128 47.7
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 4.2e-29 131.7 131 49.6
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 4.2e-29 131.7 131 49.6
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 5.5e-29 131.3 127 48.0
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 7.2e-29 131.0 133 47.4
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.2e-28 130.2 101 56.4
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.6e-28 129.8 125 50.4
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 3.6e-28 128.6 135 46.7
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 4.7e-28 128.3 128 45.3
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 4.7e-28 128.3 114 49.1
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 4.7e-28 128.3 128 46.1
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 4.7e-28 128.3 128 45.3
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 4.7e-28 128.3 128 45.3
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 4.7e-28 128.3 128 46.1
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 8.0e-28 127.5 114 50.9
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 8.0e-28 127.5 129 45.7
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.4e-27 126.7 121 50.4
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 3.0e-27 125.6 129 48.1
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.2e-26 123.6 85 61.2
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 1.2e-26 123.6 133 48.9
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.2e-26 123.6 128 51.6
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 1.5e-26 123.2 172 39.0
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.5e-26 123.2 101 56.4
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 9.8e-26 120.6 129 46.5
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 4.9e-25 118.2 133 45.9
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.8e-24 116.3 83 63.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 2.4e-24 115.9 99 51.5
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 2.0e-23 112.8 81 61.7
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 1.0e-22 110.5 80 61.2
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 2.3e-22 109.4 116 45.7
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.5e-21 106.7 81 60.5
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.5e-21 106.7 82 59.8
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.9e-17 92.4 102 43.1
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.4e-16 89.4 73 56.2
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 9.2e-16 87.4 62 64.5
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 3.3e-13 79.0 52 65.4
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 1.2e-12 77.0 114 37.7
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.9e-08 63.2 64 40.6
Cre12.g549500 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 1.6e-07 60.1 91 30.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.3e-06 57.0 51 45.1


User provided reference genes

Program Settings