Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 0.0e+00 1205.7 613 100.0
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 8.8e-236 820.5 539 77.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.0e-199 700.7 500 69.4
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.5e-176 622.5 488 61.5
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.9e-169 600.1 488 61.3
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 5.6e-166 588.6 476 59.2
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 5.6e-166 588.6 478 59.6
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.4e-164 583.9 477 59.1
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 3.1e-164 582.8 496 57.9
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 4.0e-164 582.4 475 58.9
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.2e-163 580.9 475 59.6
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.0e-163 580.1 492 60.4
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.4e-163 579.3 478 59.2
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 5.8e-163 578.6 477 58.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 7.6e-163 578.2 473 60.0
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.0e-162 577.8 499 57.7
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.0e-162 577.8 490 58.6
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.0e-162 577.8 475 58.9
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.3e-162 577.4 476 59.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.7e-162 577.0 479 58.2
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.7e-162 577.0 478 59.2
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 2.2e-162 576.6 496 56.9
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.9e-162 575.5 477 58.7
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 8.4e-162 574.7 475 60.2
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 8.4e-162 574.7 477 58.3
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 1.4e-161 573.9 471 59.7
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.4e-161 573.9 476 58.8
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.9e-161 573.5 474 58.2
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.9e-161 573.5 476 58.6
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 2.5e-161 573.2 482 58.5
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.5e-161 573.2 476 58.4
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 4.2e-161 572.4 486 58.4
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 4.2e-161 572.4 485 58.1
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 4.2e-161 572.4 473 59.2
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.5e-161 572.0 473 59.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 5.5e-161 572.0 476 58.4
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 7.1e-161 571.6 495 57.4
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.3e-161 571.2 486 58.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 9.3e-161 571.2 476 58.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 9.3e-161 571.2 473 59.0
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-160 570.9 473 59.0
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.2e-160 570.9 475 58.9
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 2.1e-160 570.1 476 58.6
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.6e-160 568.9 472 58.5
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.0e-160 568.5 474 57.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.3e-159 567.4 476 58.8
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.8e-159 567.0 471 58.2
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.3e-159 566.6 477 58.1
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 2.3e-159 566.6 473 58.6
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 3.0e-159 566.2 490 57.3
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 3.9e-159 565.8 475 58.7
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 5.1e-159 565.5 475 58.5
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 8.7e-159 564.7 476 58.4
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.1e-158 564.3 478 57.9
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.1e-158 564.3 482 56.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.5e-158 563.9 474 57.4
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.5e-158 563.1 475 56.8
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 5.7e-158 562.0 477 57.4
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 7.4e-158 561.6 477 57.4
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.3e-157 560.8 475 57.7
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.6e-157 560.5 489 57.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.6e-157 560.5 477 56.4
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.8e-157 558.9 471 58.0
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 6.3e-157 558.5 476 56.9
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.4e-156 557.4 471 58.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.4e-156 557.4 474 57.6
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.4e-156 557.4 499 56.5
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.8e-156 557.0 474 57.6
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.8e-156 557.0 474 57.0
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.8e-156 557.0 483 56.3
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.4e-156 556.6 471 57.7
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 2.4e-156 556.6 471 57.7
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.4e-156 556.6 471 58.0
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 3.1e-156 556.2 476 57.1
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.1e-156 556.2 474 56.3
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 6.9e-156 555.1 471 57.1
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 9.0e-156 554.7 471 57.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.5e-155 553.9 471 57.7
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 2.0e-155 553.5 480 55.8
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 2.0e-155 553.5 480 55.8
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 2.0e-155 553.5 471 57.5
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 2.6e-155 553.1 476 56.1
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 4.5e-155 552.4 466 58.2
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 7.6e-155 551.6 474 55.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.3e-154 550.8 478 55.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.2e-154 550.1 474 57.0
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.9e-154 549.7 482 56.0
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 3.8e-154 549.3 472 55.5
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 8.4e-154 548.1 470 56.4
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.9e-153 547.0 478 55.9
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 3.2e-153 546.2 472 57.2
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.2e-153 546.2 472 55.5
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.2e-152 544.3 471 55.8
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.5e-152 542.7 487 55.2
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.1e-151 538.9 441 59.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 4.3e-150 535.8 484 54.1
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 5.7e-150 535.4 485 54.4
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 3.7e-149 532.7 437 60.2
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.8e-148 530.4 486 54.7
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 9.0e-148 528.1 476 54.2
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-146 524.2 482 53.5
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.3e-146 524.2 482 53.5
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.6e-144 515.8 473 54.1
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.9e-143 512.7 462 56.1
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 3.9e-143 512.7 462 55.0
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 8.8e-143 511.5 498 52.2
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.0e-142 510.4 480 52.7
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.3e-142 509.6 480 52.7
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.7e-141 506.1 423 58.6
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.1e-140 503.1 471 53.7
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 9.1e-140 501.5 516 52.7
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.6e-139 500.0 480 51.2
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.9e-139 498.8 415 57.3
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 3.3e-134 483.0 394 60.4
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 7.7e-131 471.9 474 50.8
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 4.0e-127 459.5 478 49.8
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 8.8e-127 458.4 467 52.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.5e-126 457.6 432 55.1
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 3.2e-121 439.9 476 48.1
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.3e-109 401.4 444 48.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 2.0e-99 367.5 308 59.7
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.9e-97 360.9 382 49.7
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 9.8e-94 348.6 318 56.0
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 4.3e-57 226.9 481 31.2
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 2.4e-47 194.5 163 57.1
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.2e-36 157.5 434 25.6
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 9.3e-36 156.0 121 59.5
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 6.7e-26 123.2 108 50.9
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 5.0e-21 107.1 454 24.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 5.2e-18 97.1 64 62.5
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.0e-17 95.1 77 64.9
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.9e-12 78.6 459 24.6
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.7e-08 64.3 49 59.2


User provided reference genes

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