Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_30620 Physcomitrium patens HOM05D007631 ORTHO05D009566 6.0e-140 500.7 237 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2165 Anthoceros agrestis HOM05D007631 ORTHO05D009566 5.7e-50 201.8 199 48.7
PSO478G5292 Papaver somniferum HOM05D007631 ORTHO05D009566 1.2e-26 124.4 235 34.5
Potri.005G094700 Populus trichocarpa HOM05D007631 ORTHO05D009566 1.1e-24 117.9 204 33.3
PSO017G5087 Papaver somniferum HOM05D007631 ORTHO05D009566 7.8e-23 111.7 215 35.3
AL3G33250 Arabidopsis lyrata HOM05D007631 ORTHO05D009566 1.3e-22 110.9 188 34.6
AT3G19800 Arabidopsis thaliana HOM05D007631 ORTHO05D009566 1.3e-22 110.9 228 31.1
CAN.G157.15 Capsicum annuum HOM05D007631 ORTHO05D009566 2.3e-22 110.2 226 31.0
EL10Ac9g22926 Beta vulgaris HOM05D007631 ORTHO05D009566 5.1e-22 109.0 226 31.4
C01p44350 Brassica napus HOM05D007631 ORTHO05D009566 6.6e-22 108.6 188 34.0
BolC1t04400H Brassica oleracea HOM05D007631 ORTHO05D009566 6.6e-22 108.6 188 34.0
Hma1.2p1_0499F.1_g166830 Hydrangea macrophylla HOM05D007631 ORTHO05D009566 6.6e-22 108.6 197 31.0
Carub.0003s1968 Capsella rubella HOM05D007631 ORTHO05D009566 8.6e-22 108.2 188 34.0
SalBow6G3201 Salvia bowleyana HOM05D007631 ORTHO05D009566 1.1e-21 107.8 201 30.8
Manes.04G066700 Manihot esculenta HOM05D007631 ORTHO05D009566 1.5e-21 107.5 238 31.9
Eucgr.J00853 Eucalyptus grandis HOM05D007631 ORTHO05D009566 1.9e-21 107.1 183 33.9
Sopen02g009160 Solanum pennellii HOM05D007631 ORTHO05D009566 1.9e-21 107.1 212 29.2
Nn4g24939 Nelumbo nucifera HOM05D007631 ORTHO05D009566 2.5e-21 106.7 184 33.2
A01p34940 Brassica napus HOM05D007631 ORTHO05D009566 3.3e-21 106.3 188 34.0
BraA01t03577Z Brassica rapa HOM05D007631 ORTHO05D009566 3.3e-21 106.3 188 34.0
Solyc02g055440.4 Solanum lycopersicum HOM05D007631 ORTHO05D009566 4.3e-21 105.9 212 29.2
Aa31LG8G6570 Aethionema arabicum HOM05D007631 ORTHO05D009566 5.6e-21 105.5 193 33.2
Gohir.A03G110300 Gossypium hirsutum HOM05D007631 ORTHO05D009566 7.3e-21 105.1 182 31.3
PGSC0003DMG400029978 Solanum tuberosum HOM05D007631 ORTHO05D009566 9.6e-21 104.8 207 30.0
AUR62015208 Chenopodium quinoa HOM05D007631 ORTHO05D009566 1.2e-20 104.4 196 32.1
Gohir.D02G134900 Gossypium hirsutum HOM05D007631 ORTHO05D009566 1.2e-20 104.4 183 31.7
TWI53G1419 Tripterygium wilfordii HOM05D007631 ORTHO05D009566 1.2e-20 104.4 181 33.1
Thhalv10021444m.g Eutrema salsugineum HOM05D007631 ORTHO05D009566 1.6e-20 104.0 188 34.0
Ciclev10032529m.g Citrus clementina HOM05D007631 ORTHO05D009566 2.1e-20 103.6 219 30.1
Sp3g17810 Schrenkiella parvula HOM05D007631 ORTHO05D009566 2.1e-20 103.6 188 34.0
MD16G1250700 Malus domestica HOM05D007631 ORTHO05D009566 4.7e-20 102.4 192 30.7
unitig_699.g19551 Utricularia gibba HOM05D007631 ORTHO05D009566 1.1e-19 101.3 212 30.7
Duzib268G1119 Durio zibethinus HOM05D007631 ORTHO05D009566 1.4e-19 100.9 183 31.1
ECA246G0740 Erigeron canadensis HOM05D007631 ORTHO05D009566 1.4e-19 100.9 193 33.7
ClCG10G011860 Citrullus lanatus HOM05D007631 ORTHO05D009566 1.8e-19 100.5 180 31.1
CsaV3_3G032520 Cucumis sativus L. HOM05D007631 ORTHO05D009566 3.1e-19 99.8 180 30.0
PGR119G1778 Punica granatum HOM05D007631 ORTHO05D009566 3.1e-19 99.8 183 30.6
Nitab4.5_0002392g0040 Nicotiana tabacum HOM05D007631 ORTHO05D009566 6.8e-19 98.6 231 29.0
Cc11_g05090 Coffea canephora HOM05D007631 ORTHO05D009566 1.2e-18 97.8 181 29.8
HPP92_025628 Vanilla planifolia HOM05D007631 ORTHO05D009566 2.0e-18 97.1 207 31.4
MELO3C024033.2 Cucumis melo HOM05D007631 ORTHO05D009566 2.6e-18 96.7 202 28.2
CANSAT64G0359 Cannabis sativa HOM05D007631 ORTHO05D009566 3.4e-18 96.3 186 30.1
CsaV3_3G031500 Cucumis sativus L. HOM05D007631 ORTHO05D009566 3.4e-18 96.3 226 27.0
VMungo1127G1566 Vigna mungo HOM05D007631 ORTHO05D009566 5.8e-18 95.5 183 32.2
Lalb_Chr03g0024841 Lupinus albus HOM05D007631 ORTHO05D009566 9.9e-18 94.7 207 29.5
CARHR095310 Cardamine hirsuta HOM05D007631 ORTHO05D009566 4.9e-17 92.4 221 30.3
FAN12G2650 Fragaria x ananassa HOM05D007631 ORTHO05D009566 8.4e-17 91.7 211 29.9
Lj3g0001232 Lotus japonicus HOM05D007631 ORTHO05D009566 1.4e-16 90.9 208 31.2
Medtr4g074590 Medicago truncatula HOM05D007631 ORTHO05D009566 1.4e-16 90.9 183 30.1
CiPaw.09G164100 Carya illinoinensis HOM05D007631 ORTHO05D009566 1.9e-16 90.5 215 26.0
GSVIVG01010153001 Vitis vinifera HOM05D007631 ORTHO05D009566 9.3e-16 88.2 223 27.4
Lsat_1_v5_gn_3_33601 Lactuca sativa HOM05D007631 ORTHO05D009566 1.2e-15 87.8 197 29.4
Dinv17601 Davidia involucrata HOM05D007631 ORTHO05D009566 2.1e-15 87.0 238 26.1
Ca_03026_v3 Cicer arietinum L. HOM05D007631 ORTHO05D009566 3.5e-15 86.3 183 31.7
TPR.G32328 Trifolium pratense HOM05D007631 ORTHO05D009566 3.5e-15 86.3 184 32.1
FAN07G2143 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.3e-14 83.6 220 28.2
Oeu033537.1 Olea europaea HOM05D007631 ORTHO05D009566 2.3e-14 83.6 138 32.6
SGA_v2.0_scaffold88G27232 Striga asiatica HOM05D007631 ORTHO05D009566 8.7e-14 81.6 125 32.0
Psat7g173560 Pisum sativum HOM05D007631 ORTHO05D009566 1.1e-13 81.3 150 31.3
Os04g0525000 Oryza sativa ssp. japonica HOM05D007631 ORTHO05D009566 1.9e-13 80.5 230 27.8
ATR0618G124 Amborella trichopoda HOM05D007631 ORTHO05D009566 2.5e-13 80.1 132 33.3
HanXRQChr17g0540801 Helianthus annuus HOM05D007631 ORTHO05D009566 3.3e-13 79.7 212 28.3
COL.COLO4_27670 Corchorus olitorius HOM05D007631 ORTHO05D009566 5.6e-13 79.0 194 27.3
Hund24286 Selenicereus undatus HOM05D007631 ORTHO05D009566 4.8e-12 75.9 187 30.5
Phvul.011G031300 Phaseolus vulgaris HOM05D007631 ORTHO05D009566 1.4e-11 74.3 180 27.8
arahy.Tifrunner.gnm1.ann1.C4PR70 Arachis hypogaea HOM05D007631 ORTHO05D009566 2.4e-11 73.6 218 28.4
Sc10g0006760 Simmondsia chinensis HOM05D007631 ORTHO05D009566 9.0e-11 71.6 170 30.6
vmacro10901 Vaccinium macrocarpon HOM05D007631 ORTHO05D009566 9.0e-11 71.6 138 28.3
Atru.chr11.1322 Acer truncatum HOM05D007631 ORTHO05D009566 1.2e-10 71.2 117 32.5
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 3.4e-10 69.7 187 25.7
Sed0008358 Sechium edule HOM05D007631 ORTHO05D009566 3.4e-10 69.7 179 26.8
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 1.7e-09 67.4 98 31.6
DCAR_030399 Daucus carota HOM05D007631 ORTHO05D009566 1.7e-09 67.4 166 27.1
Peaxi162Scf00363g00724 Petunia axillaris HOM05D007631 ORTHO05D009566 3.8e-09 66.2 102 35.3
FAN17G2236 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.4e-08 63.5 177 28.2
MBI06_g36505_MAGBIO Magnolia biondii HOM05D007631 ORTHO05D009566 9.3e-08 61.6 160 27.5
Atru.BG.289.p Acer truncatum HOM05D007631 ORTHO05D009566 4.6e-07 59.3 103 34.0
Gorai.005G150800 Gossypium raimondii HOM05D007631 ORTHO05D009566 6.0e-07 58.9 115 27.8
Prupe.1G077300 Prunus persica HOM05D007631 ORTHO05D009566 1.3e-06 57.8 133 30.8
QL03p043760 Quercus lobata HOM05D007631 ORTHO05D009566 1.7e-06 57.4 99 29.3
FvH4_4g07430 Fragaria vesca HOM05D007631 ORTHO05D009566 6.6e-06 55.5 108 28.7


User provided reference genes

Program Settings