Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.3e-250 867.8 426 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 7.7e-146 521.2 411 63.7
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 9.7e-141 504.2 414 59.7
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 8.2e-132 474.6 410 56.3
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 7.0e-131 471.5 410 55.9
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 9.1e-131 471.1 415 55.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.6e-130 470.3 410 55.9
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.0e-130 469.9 418 55.5
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.0e-130 469.9 417 54.7
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.5e-130 469.2 411 55.0
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 5.9e-130 468.4 423 55.6
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.9e-130 468.4 426 53.5
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.3e-129 467.2 418 55.0
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-129 466.1 418 55.3
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.0e-129 465.3 411 55.5
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 8.5e-129 464.5 419 54.9
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.1e-128 464.2 416 55.0
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 4.2e-128 462.2 419 55.1
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 5.5e-128 461.8 419 54.9
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 9.4e-128 461.1 411 55.0
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-127 460.7 419 54.7
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-127 460.7 419 54.7
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 2.7e-127 459.5 422 54.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 2.7e-127 459.5 422 54.3
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 3.6e-127 459.1 419 54.4
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.6e-127 459.1 426 51.9
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 3.6e-127 459.1 416 54.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 6.1e-127 458.4 430 53.7
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 6.1e-127 458.4 418 53.3
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 8.0e-127 458.0 420 53.8
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.0e-126 457.6 431 53.4
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.0e-126 457.6 416 53.8
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.4e-126 457.2 417 53.5
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.8e-126 456.8 421 53.0
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.8e-126 456.8 415 54.2
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.8e-126 456.8 424 53.1
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.0e-126 456.1 416 53.4
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 4.0e-126 455.7 388 56.2
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.2e-126 455.3 416 53.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 6.8e-126 454.9 422 53.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 6.8e-126 454.9 418 54.1
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 8.8e-126 454.5 415 54.2
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.8e-126 454.5 418 52.6
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.2e-125 454.1 416 53.6
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-125 453.8 420 54.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 2.6e-125 453.0 419 53.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.4e-125 452.2 417 53.5
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 9.8e-125 451.1 426 51.2
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.3e-124 450.7 413 54.5
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.2e-124 449.9 417 53.2
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.2e-124 449.9 416 54.3
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.8e-124 449.5 417 53.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.8e-124 448.7 416 51.4
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.8e-124 448.7 416 51.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 4.8e-124 448.7 418 52.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 4.8e-124 448.7 413 54.7
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 4.8e-124 448.7 417 54.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 8.3e-124 448.0 412 54.4
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.1e-123 447.6 418 52.9
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.8e-123 446.8 413 54.5
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.8e-123 446.8 416 54.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.4e-123 446.4 416 51.4
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 3.1e-123 446.0 422 52.4
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.1e-123 446.0 413 53.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 4.1e-123 445.7 418 53.1
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 4.1e-123 445.7 418 53.3
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 7.0e-123 444.9 418 53.1
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 7.0e-123 444.9 461 49.2
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-122 444.1 413 54.5
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 3.5e-122 442.6 416 52.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.3e-121 439.9 421 51.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.3e-121 439.9 417 53.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 5.0e-121 438.7 429 52.4
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.9e-120 436.8 417 52.3
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 3.6e-119 432.6 438 50.0
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 4.7e-119 432.2 387 54.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.4e-118 430.6 484 47.1
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 5.7e-117 425.2 456 48.5
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 5.7e-117 425.2 394 53.8
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.3e-116 424.1 370 57.8
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 3.7e-116 422.5 449 48.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 3.1e-115 419.5 412 51.7
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.2e-114 417.5 388 52.6
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 5.9e-114 415.2 369 55.0
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.8e-111 406.4 419 49.9
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.4e-110 404.1 392 52.0
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 5.2e-110 402.1 404 51.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.9e-108 396.4 588 38.8
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.9e-108 395.6 417 48.9
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.4e-107 394.0 416 47.8
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 5.4e-107 392.1 363 53.2
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.6e-106 390.6 397 50.9
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.3e-105 387.5 408 50.0
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 6.6e-105 385.2 412 49.8
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.9e-104 383.6 396 52.8
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 3.3e-104 382.9 421 48.5
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 5.6e-104 382.1 434 47.0
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.7e-100 370.5 414 46.6
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.1e-97 359.0 333 53.8
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 6.6e-97 358.6 337 53.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.5e-96 357.5 406 47.8
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.6e-95 352.8 325 53.8
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 6.2e-95 352.1 323 54.2
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.6e-93 346.7 328 52.4
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 3.2e-91 339.7 356 48.3
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 6.6e-89 332.0 326 50.9
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.5e-88 330.9 333 51.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 8.1e-87 325.1 312 51.3
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 4.0e-86 322.8 418 42.1
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.9e-81 306.2 316 50.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.9e-78 295.4 397 41.1
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.1e-72 278.1 262 53.4
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 5.6e-72 275.8 268 52.2
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.1e-70 270.0 272 51.5
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 5.8e-69 265.8 459 37.3
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 4.0e-62 243.0 394 38.8
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 6.9e-62 242.3 403 36.2
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 9.0e-62 241.9 342 42.4
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 2.0e-61 240.7 177 59.9
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.3e-60 238.0 371 39.1
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-58 231.5 210 57.1
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.8e-57 227.6 396 36.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 1.8e-57 227.6 269 46.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.8e-57 227.6 406 36.7
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.0e-57 226.9 396 33.6
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 4.8e-55 219.5 191 55.5
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-52 211.5 404 32.9
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 8.4e-52 208.8 211 49.8
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.4e-51 208.0 217 49.8
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.9e-50 202.2 320 40.6
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 2.3e-49 200.7 146 59.6
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.7e-48 195.3 146 56.2
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.2e-47 194.1 144 60.4
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.2e-44 184.1 140 59.3
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 2.5e-43 180.6 144 57.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.9e-42 175.6 334 32.6
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.6e-37 160.6 182 47.8
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 6.5e-36 156.0 138 53.6
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 6.5e-36 156.0 403 28.8
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.4e-35 152.1 133 57.9
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 4.4e-32 143.3 105 60.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.7e-31 141.4 205 42.4
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.7e-26 124.0 111 54.1
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.4e-22 110.9 84 57.1
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.4e-22 110.9 84 57.1
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 4.1e-22 110.2 123 49.6
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.2e-21 108.6 91 52.7
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.8e-15 87.4 94 44.7
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 4.7e-10 70.1 76 48.7


User provided reference genes

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