Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 0.0e+00 1151.0 641 100.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 0.0e+00 1099.3 617 100.0
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.3e-247 859.0 559 80.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 6.4e-136 488.8 622 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 9.5e-124 448.4 543 46.6
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.0e-98 363.2 570 40.5
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 4.2e-95 353.2 527 42.1
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 6.0e-94 349.4 521 39.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.3e-93 348.2 524 42.2
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.1e-93 346.3 507 41.2
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.5e-92 344.7 514 39.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 5.6e-92 342.8 510 40.2
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.6e-92 342.8 472 43.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.3e-91 341.7 483 42.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.3e-91 341.7 497 42.1
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.1e-91 340.9 518 39.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 6.2e-91 339.3 479 42.4
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 8.1e-91 339.0 488 41.6
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.1e-90 337.0 518 38.8
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.3e-90 336.3 492 39.6
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.3e-90 336.3 498 40.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.0e-90 335.5 487 41.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.8e-89 332.8 465 41.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.0e-88 332.0 514 39.7
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.0e-88 332.0 509 37.7
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 6.4e-88 329.3 567 39.0
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.9e-87 327.8 520 38.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 3.2e-87 327.0 513 40.0
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.2e-87 327.0 500 38.8
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.2e-87 327.0 516 39.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 9.3e-87 325.5 538 37.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.1e-86 324.3 529 38.9
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 2.7e-86 323.9 527 38.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 6.0e-86 322.8 508 39.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 6.0e-86 322.8 518 38.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.0e-86 322.8 483 39.8
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 7.9e-86 322.4 511 40.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 7.9e-86 322.4 553 36.5
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.3e-85 321.6 511 38.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.3e-85 320.9 507 38.5
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.9e-85 320.1 511 39.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.9e-85 320.1 543 37.8
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 6.7e-85 319.3 510 38.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.1e-84 318.5 504 39.7
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.5e-84 318.2 582 35.7
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.9e-84 317.8 510 40.0
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 2.5e-84 317.4 497 39.8
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.3e-84 317.0 518 37.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.3e-83 315.1 503 39.6
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.6e-83 314.7 482 38.4
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.6e-83 314.7 576 37.0
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.8e-83 313.9 487 39.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.4e-82 311.6 510 38.2
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.8e-82 311.2 485 39.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.8e-82 311.2 482 39.4
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.1e-82 310.5 514 39.5
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 3.1e-82 310.5 517 40.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.0e-82 310.1 522 39.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 5.3e-82 309.7 565 36.1
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 5.3e-82 309.7 525 37.3
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.3e-82 309.7 573 36.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.2e-81 308.5 525 37.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.5e-81 308.1 570 36.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.6e-81 307.4 510 38.4
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.4e-81 307.0 594 35.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 3.4e-81 307.0 567 37.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-80 305.4 506 37.4
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.0e-80 305.4 537 38.9
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-80 305.1 567 36.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-80 305.1 567 36.7
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-80 305.1 509 38.5
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.7e-80 304.7 510 38.2
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-80 304.3 560 37.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-80 304.3 553 35.8
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.2e-80 304.3 530 38.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.2e-80 304.3 509 36.0
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.9e-80 303.9 556 35.6
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.9e-80 303.9 505 36.4
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.8e-80 303.5 525 36.6
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 3.8e-80 303.5 520 38.5
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.9e-80 303.1 505 38.0
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 8.4e-80 302.4 508 37.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 8.4e-80 302.4 565 34.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.1e-79 302.0 514 39.3
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.4e-79 301.6 514 38.9
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.9e-79 301.2 514 38.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 7.1e-79 299.3 514 38.3
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-78 298.5 515 38.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 3.5e-78 297.0 483 37.5
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 4.6e-78 296.6 527 38.0
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 6.1e-78 296.2 510 37.1
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.3e-76 290.0 510 38.4
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.3e-76 290.0 563 34.3
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.6e-75 288.1 515 37.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.6e-75 288.1 470 40.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.2e-75 287.7 516 37.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.1e-74 285.4 511 36.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.2e-73 282.0 512 35.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 2.0e-73 281.2 511 34.8
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 2.6e-73 280.8 498 36.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-73 279.6 511 34.8
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-73 279.6 514 36.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.0e-72 278.9 555 33.7
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.3e-72 278.5 511 35.0
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.1e-71 275.4 503 34.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.5e-71 273.1 503 35.0
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.7e-70 270.8 473 37.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 4.6e-70 270.0 506 34.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.0e-69 268.9 511 35.6
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.3e-69 267.7 550 32.9
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.9e-69 266.9 556 32.0
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 5.7e-68 263.1 556 32.2
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 5.7e-68 263.1 513 33.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.8e-67 260.0 336 44.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.1e-66 258.8 512 34.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.4e-66 258.5 556 31.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.3e-59 235.3 527 34.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.5e-55 221.1 675 28.7
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.4e-52 209.5 244 45.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.2e-48 198.0 424 33.5
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.9e-47 194.9 418 36.4
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 7.2e-47 193.0 466 31.1
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 9.4e-47 192.6 454 30.6
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.1e-46 191.4 402 32.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.0e-41 174.9 504 29.6
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.7e-33 147.9 326 34.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 9.5e-31 139.4 259 34.7
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.4e-29 135.6 98 65.3
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.0e-28 131.7 93 64.5
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 5.9e-25 120.2 181 42.0
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-20 105.5 204 34.3
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.2e-17 95.9 92 47.8
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 5.2e-13 80.5 86 44.2


User provided reference genes

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