Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.9e-130 469.2 232 100.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 9.6e-58 227.6 161 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.8e-56 223.4 157 65.0
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.6e-55 219.5 166 63.3
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.3e-54 217.2 165 62.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.7e-54 216.9 165 63.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-54 216.9 164 63.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.9e-54 216.1 165 61.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 6.4e-54 214.9 160 63.1
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.4e-54 214.9 164 63.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.4e-54 214.9 165 61.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.4e-54 214.5 165 61.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.4e-53 213.0 165 60.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.2e-53 212.6 160 61.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.2e-53 212.6 160 61.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 4.2e-53 212.2 165 60.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 4.2e-53 212.2 160 61.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 4.2e-53 212.2 160 61.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 4.2e-53 212.2 165 59.4
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.4e-53 211.8 165 61.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.1e-53 211.5 165 60.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.3e-53 211.1 164 60.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 9.3e-53 211.1 164 60.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 9.3e-53 211.1 164 60.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-52 210.7 160 60.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-52 210.7 165 59.4
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-52 210.7 164 61.0
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.6e-52 210.3 170 60.0
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.1e-52 209.9 165 61.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.5e-52 209.1 160 60.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.5e-52 209.1 155 63.9
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.6e-52 208.8 160 61.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.0e-52 208.4 160 61.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 6.0e-52 208.4 165 60.0
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.0e-52 208.4 160 61.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 7.8e-52 208.0 159 59.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 7.8e-52 208.0 165 60.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-51 207.6 160 60.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.0e-51 207.6 165 60.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.0e-51 207.6 162 60.5
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-51 207.6 162 60.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.0e-51 207.6 162 57.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-51 207.2 159 59.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.3e-51 207.2 155 63.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.3e-51 207.2 160 63.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.7e-51 206.8 156 62.8
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.3e-51 206.5 162 58.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.3e-51 206.5 166 59.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.3e-51 206.5 165 58.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.3e-51 206.5 165 58.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-51 206.1 165 59.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-51 206.1 165 59.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.0e-51 206.1 164 57.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.0e-51 206.1 160 60.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.0e-51 206.1 165 58.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.0e-51 206.1 160 60.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.9e-51 205.7 160 60.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.9e-51 205.7 167 57.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.9e-51 205.7 155 61.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.9e-51 205.7 162 56.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.9e-51 205.7 161 57.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 6.6e-51 204.9 165 57.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 6.6e-51 204.9 159 59.1
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.6e-51 204.9 166 58.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 6.6e-51 204.9 165 58.2
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 6.6e-51 204.9 165 60.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.7e-51 204.5 169 56.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 8.7e-51 204.5 157 61.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 8.7e-51 204.5 166 57.2
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.7e-51 204.5 160 60.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.7e-51 204.5 165 59.4
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-50 204.1 165 58.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.1e-50 204.1 163 59.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-50 204.1 155 60.6
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-50 203.8 155 60.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-50 203.8 169 56.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.5e-50 203.8 184 54.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.5e-50 203.8 160 59.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.9e-50 203.4 162 59.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-50 203.4 157 60.5
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.5e-50 203.0 164 60.4
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.5e-50 203.0 165 57.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.5e-50 203.0 159 59.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.5e-50 203.0 166 57.2
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.3e-50 202.6 162 58.0
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.3e-50 202.6 174 55.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.6e-50 201.8 155 60.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.6e-50 201.8 167 55.7
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 7.3e-50 201.4 159 59.1
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 9.6e-50 201.1 164 58.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-49 200.7 156 61.5
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.6e-49 200.3 167 55.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-49 199.9 167 55.1
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.1e-49 199.9 167 55.1
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.1e-49 199.9 165 57.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.8e-49 199.5 155 60.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.6e-49 199.1 157 58.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.6e-49 199.1 164 56.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.8e-49 198.7 157 58.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 4.8e-49 198.7 159 57.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.8e-49 198.7 157 61.8
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 4.8e-49 198.7 159 57.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.2e-49 198.4 167 54.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.1e-49 198.0 166 57.2
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 8.1e-49 198.0 148 62.8
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.1e-48 197.6 164 57.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-48 197.6 166 57.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-48 197.6 166 57.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.4e-48 197.2 162 58.0
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.8e-48 196.8 157 58.0
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.8e-48 196.8 155 60.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.1e-48 196.1 157 59.2
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 4.0e-48 195.7 155 57.4
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-47 193.4 156 57.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.6e-47 193.0 157 56.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.6e-47 193.0 174 52.9
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.6e-47 193.0 159 57.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.6e-47 193.0 160 56.2
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.4e-47 192.6 157 56.7
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.4e-47 192.6 160 54.4
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 4.5e-47 192.2 162 54.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.8e-47 191.8 177 54.8
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.8e-47 191.8 166 56.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.7e-46 190.3 165 54.5
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.7e-46 190.3 159 54.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-46 189.5 180 53.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.9e-46 188.7 158 55.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.2e-45 185.7 161 55.3
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.4e-45 185.3 159 53.5
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 7.1e-45 184.9 159 54.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 9.3e-45 184.5 161 55.3
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 9.3e-45 184.5 161 53.4
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 9.3e-45 184.5 159 53.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.2e-44 184.1 157 56.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.5e-44 182.6 159 53.5
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 7.9e-44 181.4 159 52.8
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-43 180.3 167 52.1
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.9e-43 179.1 132 62.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.1e-42 177.6 166 54.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.5e-42 176.4 161 53.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.5e-42 176.4 159 50.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.6e-42 175.3 155 54.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 5.6e-42 175.3 132 59.1
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 8.1e-41 171.4 161 52.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-40 171.0 158 53.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.9e-40 168.3 155 52.9
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-39 167.2 164 51.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.5e-39 165.6 132 59.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.8e-39 165.2 153 52.3
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.3e-35 153.3 164 48.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.1e-35 152.1 130 58.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-33 147.1 112 64.3
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.1e-33 146.7 150 48.0
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.8e-33 146.4 112 61.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.9e-32 141.7 131 55.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.8e-31 138.7 122 55.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.5e-30 135.2 153 45.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-29 134.0 165 44.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.9e-29 133.7 165 44.8
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.5e-29 132.1 177 39.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.6e-28 129.0 129 49.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.9e-27 125.9 160 41.9
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-26 124.0 165 40.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.6e-25 120.6 113 54.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-24 114.8 92 59.8
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 9.0e-24 114.8 91 58.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.2e-22 110.2 89 60.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 3.8e-22 109.4 89 53.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.0e-19 101.3 90 53.3
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.1e-16 89.4 83 51.8
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.5e-15 85.9 71 54.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.3e-11 73.6 159 31.4
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 7.4e-10 68.6 177 31.1
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.8e-09 66.6 176 29.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 9.1e-08 61.6 178 30.3
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.9e-07 58.9 37 78.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-06 57.4 47 55.3


User provided reference genes

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