Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 3546.1 1851 100.0
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 2011.9 1890 57.8
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1998.4 1877 57.6
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1603.2 1878 47.2
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1602.4 1863 47.9
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1599.3 1721 50.9
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 1592.8 1892 47.3
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1583.5 1883 46.9
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 1582.4 1887 47.1
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1582.0 1865 46.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 1574.3 1880 46.8
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 1573.9 1879 46.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 1573.5 1891 47.0
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1572.8 1891 47.3
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1566.2 1881 46.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 1566.2 1873 46.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1562.7 1877 46.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 1560.4 1843 47.3
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 1559.7 1939 45.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 1554.7 1886 46.5
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 1552.7 1868 46.1
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 1552.7 1871 45.9
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1552.0 1877 46.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 1551.2 1882 46.0
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1548.1 1882 45.8
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 1548.1 1883 46.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1547.7 1867 46.4
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 1546.2 1886 45.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 1543.9 1873 45.5
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1543.5 1894 45.9
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1542.7 1822 46.9
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1542.3 1886 46.0
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1540.4 1884 45.8
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1540.4 1886 45.3
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1538.1 1877 46.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1538.1 1894 45.3
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1538.1 1877 46.0
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1537.3 1874 46.0
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1537.3 1880 45.7
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1536.9 1879 45.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1878 45.8
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1862 46.1
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1887 45.5
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1533.9 1856 46.2
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1531.5 1856 46.1
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1530.4 1864 45.8
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1528.1 1870 45.4
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1527.7 1876 45.3
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1527.3 1877 45.5
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1525.4 1884 46.1
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 1525.0 1874 45.5
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1524.6 1884 45.0
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1523.1 1869 45.4
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1521.1 1883 45.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1520.0 1872 45.4
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1519.2 1880 45.5
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1516.9 1878 45.2
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1515.4 1909 45.4
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1515.0 1866 45.8
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1515.0 1875 45.3
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1512.7 1874 46.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1509.2 1845 46.3
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1504.6 1845 45.5
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1502.3 1887 44.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1501.9 1845 45.3
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1494.2 1845 46.0
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1493.8 1897 44.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1493.4 1880 45.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1486.1 1880 45.0
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1484.9 1885 45.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1483.4 1899 44.5
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1482.2 1910 44.7
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1480.3 1879 44.2
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1474.1 1879 44.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1465.3 2008 42.0
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1452.6 1884 44.3
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1452.6 1872 44.5
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1450.3 1858 45.1
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1433.7 1920 43.5
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1373.6 2386 37.4
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1352.4 1570 46.9
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1302.0 1407 49.0
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1265.0 1382 49.1
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1254.2 1555 45.6
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1189.1 1461 45.4
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1180.6 1463 45.9
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 0.0e+00 1166.0 1588 41.7
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1106.7 1367 44.8
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 3.1e-300 1036.2 1859 36.7
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 7.1e-297 1025.0 1284 44.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 2.7e-296 1023.1 1408 43.3
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.4e-292 1010.7 1762 37.2
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 8.7e-287 991.5 1400 42.2
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 4.3e-286 989.2 1173 45.5
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 3.2e-281 973.0 1192 45.9
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-276 956.8 914 55.9
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 1.4e-273 947.6 1402 41.9
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 8.8e-271 938.3 1875 35.5
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 3.1e-268 929.9 1143 46.1
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.9e-257 894.0 1121 44.5
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 6.3e-245 852.4 912 49.8
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 5.1e-194 683.3 2029 29.0
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.8e-152 543.9 835 37.8
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.2e-148 531.2 497 54.9
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-139 502.7 651 43.6
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.3e-130 471.9 678 41.0
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.4e-127 461.8 645 42.9
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 5.0e-125 454.1 549 44.4
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 7.3e-116 423.7 1557 24.9
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 8.0e-115 420.2 443 49.4
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.0e-110 405.6 445 47.4
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 5.0e-109 401.0 271 69.4
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.0e-101 376.7 504 43.7
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 6.6e-101 374.0 349 54.7
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 4.9e-88 331.3 446 44.2
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.4e-71 274.6 367 44.1
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.2e-64 252.7 546 32.1
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.9e-64 251.5 161 70.8
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 9.0e-58 230.7 281 44.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 9.3e-55 220.7 283 42.4
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.3e-53 216.1 284 43.3
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-50 206.1 187 55.6
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.3e-35 154.8 255 40.4
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.8e-34 153.3 181 44.8
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 7.2e-31 141.4 319 33.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.2e-30 140.6 316 32.6
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 8.0e-30 137.9 165 44.2
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.0e-28 133.3 153 43.8
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 6.3e-27 128.3 136 53.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 6.3e-27 128.3 279 32.6
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.4e-26 127.1 219 37.4
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-26 126.7 85 68.2
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.0e-24 120.9 138 48.6
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.5e-23 116.3 192 35.4
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 5.5e-23 115.2 167 41.9
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.6e-22 112.5 201 36.3
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.6e-22 112.5 76 65.8
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 4.0e-21 109.0 86 61.6
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.2e-20 107.5 121 52.1
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 9.1e-18 97.8 158 34.8
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 9.1e-18 97.8 158 34.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-17 97.1 83 53.0
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.5e-17 95.9 152 38.8
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.2e-16 93.2 206 33.5
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.9e-15 90.1 243 32.1
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 2.6e-12 79.7 55 65.5
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 3.4e-12 79.3 77 50.6
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.7e-12 78.6 74 44.6
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 9.8e-12 77.8 95 46.3
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.9e-08 66.2 128 33.6
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.6e-08 65.1 87 41.4


User provided reference genes

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