Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 6.5e-196 687.2 341 100.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.1e-134 481.9 335 71.0
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 5.1e-132 474.9 323 70.6
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.4e-129 466.8 339 68.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 9.9e-128 460.7 334 68.9
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.9e-127 458.4 334 68.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 6.4e-127 458.0 343 67.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.4e-127 458.0 332 67.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 8.4e-127 457.6 345 67.0
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.1e-126 457.2 331 67.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.9e-126 456.4 334 67.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.4e-126 456.1 334 66.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 5.4e-126 454.9 338 66.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 9.2e-126 454.1 332 66.0
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.6e-125 453.4 335 67.2
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.1e-125 453.0 338 66.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.1e-125 453.0 326 68.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.7e-125 452.6 339 68.1
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 2.7e-125 452.6 331 68.0
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.5e-125 452.2 332 66.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 4.6e-125 451.8 340 66.5
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 7.8e-125 451.1 339 65.8
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.0e-124 450.7 333 67.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.3e-124 450.3 332 66.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.3e-124 450.3 340 66.2
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.7e-124 449.9 332 66.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.3e-124 449.5 328 68.0
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.0e-124 449.1 332 66.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.9e-124 448.7 326 67.2
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 3.9e-124 448.7 325 67.4
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.9e-124 448.7 331 65.9
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.1e-124 448.4 339 66.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 6.6e-124 448.0 332 66.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.6e-124 448.0 338 64.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 8.6e-124 447.6 332 66.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 8.6e-124 447.6 344 65.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 8.6e-124 447.6 339 65.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 8.6e-124 447.6 324 67.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.1e-123 447.2 345 64.6
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.1e-123 447.2 339 67.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.5e-123 446.8 343 63.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.6e-122 443.4 326 66.9
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.1e-122 443.0 330 65.8
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.1e-122 443.0 340 65.6
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-122 442.6 344 64.2
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.8e-122 442.6 344 64.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.8e-122 442.6 327 67.0
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.8e-122 442.6 331 65.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.8e-122 442.6 330 64.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 3.6e-122 442.2 327 65.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 3.6e-122 442.2 329 64.4
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.7e-122 441.8 332 64.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 4.7e-122 441.8 328 66.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 6.2e-122 441.4 337 65.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.2e-122 441.4 343 63.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 6.2e-122 441.4 340 64.1
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 8.1e-122 441.0 330 65.5
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.1e-121 440.7 331 64.7
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.4e-121 440.3 328 65.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.8e-121 439.9 341 63.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.0e-121 438.7 331 64.7
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 5.2e-121 438.3 334 64.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-121 438.3 334 64.4
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.2e-120 437.2 374 59.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.2e-120 437.2 329 66.3
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.5e-120 436.8 342 64.3
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-120 436.8 338 63.9
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.6e-120 436.0 327 67.3
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 4.4e-120 435.3 341 63.0
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.7e-119 433.3 328 64.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.2e-119 433.0 335 64.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.8e-119 432.2 341 63.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 8.4e-119 431.0 333 64.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.4e-118 430.3 335 63.3
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.4e-118 428.3 368 58.4
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 5.4e-118 428.3 335 62.7
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 7.1e-118 427.9 360 60.3
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 9.3e-118 427.6 325 67.1
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.2e-117 427.2 336 62.8
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.1e-117 426.4 334 64.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 2.7e-117 426.0 329 64.1
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-117 426.0 351 61.3
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-117 426.0 333 64.3
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 3.5e-117 425.6 333 64.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 6.0e-117 424.9 328 64.0
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 6.0e-117 424.9 384 57.8
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.9e-116 422.2 309 65.7
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 5.1e-116 421.8 329 61.1
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.9e-115 419.9 333 65.2
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.6e-115 418.3 351 60.7
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.4e-113 412.9 340 62.1
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 4.4e-112 408.7 338 61.2
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 6.4e-111 404.8 408 54.2
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.4e-111 404.4 324 61.1
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.0e-109 398.3 331 60.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.9e-109 397.9 332 61.4
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.0e-108 397.5 329 60.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 9.6e-107 391.0 345 59.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.0e-100 370.9 258 70.2
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 5.1e-100 368.6 255 67.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 9.6e-99 364.4 255 68.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.6e-98 363.6 250 69.2
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.7e-98 362.5 262 67.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 6.9e-97 358.2 321 58.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 9.3e-94 347.8 257 65.0
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.7e-92 341.7 304 56.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 6.7e-92 341.7 343 53.6
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 5.5e-86 322.0 379 48.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 8.7e-84 314.7 332 50.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.6e-82 310.5 336 48.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.4e-80 302.8 210 69.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 1.1e-70 271.2 338 42.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-70 270.8 241 57.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 3.6e-69 266.2 272 51.8
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.4e-65 253.4 315 47.0
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.6e-64 250.8 191 63.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 4.2e-62 242.7 175 69.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-52 211.1 215 54.9
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.0e-52 209.9 138 71.7
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 2.0e-51 207.2 137 70.1
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.6e-45 186.4 127 65.4
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-32 142.9 170 44.1
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.1e-29 134.0 129 54.3
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.2e-29 132.5 129 53.5
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.8e-27 125.9 133 51.9
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 7.5e-27 125.6 114 56.1
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.2e-25 120.2 105 56.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.1e-25 119.8 122 51.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.1e-25 119.8 122 51.6
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 5.4e-25 119.4 105 60.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-24 117.5 122 50.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.0e-23 113.6 200 40.0
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 3.1e-20 103.6 73 63.0
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.2e-19 101.7 78 62.8
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.1e-14 85.1 69 63.8
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.6e-13 80.1 96 46.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 6.2e-13 79.3 61 62.3
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 8.1e-13 79.0 78 57.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 8.9e-12 75.5 189 33.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.9e-10 69.7 68 58.8
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 3.2e-09 67.0 55 60.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.2e-08 65.1 65 49.2
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 4.6e-08 63.2 51 54.9
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.0e-07 62.0 61 54.1
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.7e-07 61.2 93 48.4
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 3.0e-07 60.5 53 56.6
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 5.1e-07 59.7 174 28.2
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.5e-06 58.2 50 50.0
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 1.5e-06 58.2 171 28.7


User provided reference genes

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