Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.0e-216 755.0 399 100.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.7e-134 483.4 358 67.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.3e-75 287.7 272 53.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.5e-74 283.5 232 58.6
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 6.2e-73 278.9 231 58.9
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 6.2e-73 278.9 237 56.5
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.8e-72 277.3 232 56.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.2e-71 274.6 237 53.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.2e-71 274.6 287 51.6
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.5e-71 274.2 268 52.6
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.0e-71 273.9 232 56.9
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.0e-71 273.9 264 52.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.6e-71 273.5 239 55.6
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.6e-71 273.5 270 50.7
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 4.5e-71 272.7 229 57.2
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 9.9e-71 271.6 261 51.3
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.3e-70 271.2 232 56.0
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-70 271.2 232 56.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.3e-70 271.2 240 54.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.7e-70 270.8 232 56.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 2.2e-70 270.4 234 55.6
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.9e-70 270.0 231 57.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.9e-70 270.0 231 57.1
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.8e-70 269.6 231 55.4
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.8e-70 269.6 234 55.6
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.9e-70 269.2 266 47.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.4e-70 268.9 288 48.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.4e-70 268.9 265 51.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 6.4e-70 268.9 231 55.0
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 8.4e-70 268.5 246 53.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.1e-69 268.1 285 51.2
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.4e-69 267.7 243 53.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.4e-69 267.7 243 53.5
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.9e-69 267.3 231 55.8
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.2e-69 266.5 243 53.9
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 3.2e-69 266.5 259 52.9
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.2e-69 266.2 232 55.6
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 5.5e-69 265.8 272 49.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.3e-69 265.0 232 56.0
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 9.3e-69 265.0 255 51.8
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.2e-68 264.6 252 53.2
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.6e-68 264.2 243 52.7
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.7e-68 263.5 276 50.0
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 3.5e-68 263.1 243 53.1
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 3.5e-68 263.1 258 51.2
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.6e-68 262.7 289 48.1
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 4.6e-68 262.7 253 51.8
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.6e-68 262.7 230 56.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.6e-68 262.7 230 56.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.0e-68 262.3 233 56.2
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.3e-67 261.2 259 52.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.3e-67 261.2 256 51.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.3e-67 261.2 229 54.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.8e-67 260.8 261 52.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.3e-67 260.4 253 51.4
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.0e-67 260.0 290 47.2
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.0e-67 260.0 316 44.3
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.0e-67 260.0 288 48.6
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.0e-67 260.0 267 50.6
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 3.9e-67 259.6 232 54.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.9e-67 259.6 260 48.8
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.1e-67 259.2 263 50.6
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 6.7e-67 258.8 256 50.8
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 6.7e-67 258.8 240 52.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.7e-67 258.8 232 54.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 6.7e-67 258.8 243 52.3
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 6.7e-67 258.8 234 54.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-66 258.1 230 54.8
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 5.6e-66 255.8 238 53.4
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 5.6e-66 255.8 257 49.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 7.4e-66 255.4 231 54.1
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 9.6e-66 255.0 232 53.9
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.3e-65 254.6 229 52.8
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-65 253.4 253 50.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.8e-65 253.4 283 46.3
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 3.7e-65 253.1 230 53.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.7e-65 253.1 261 49.8
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 4.8e-65 252.7 263 49.8
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.4e-64 251.1 228 53.5
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.4e-64 250.4 230 52.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.4e-64 250.4 234 53.4
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 3.1e-64 250.0 209 57.9
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 4.0e-64 249.6 263 47.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.0e-64 249.6 279 46.6
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-63 248.1 230 52.2
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 3.4e-63 246.5 212 57.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.5e-63 246.1 263 48.3
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 7.6e-63 245.4 255 48.6
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 3.8e-62 243.0 268 48.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.8e-62 243.0 204 58.3
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.0e-60 235.7 231 50.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 6.0e-60 235.7 248 45.2
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.8e-59 234.2 250 50.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.3e-59 233.8 257 48.2
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 6.7e-59 232.3 260 46.2
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.9e-58 230.7 213 54.5
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.6e-57 227.6 296 41.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.1e-56 224.9 214 50.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.1e-56 224.9 208 55.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.3e-56 222.6 212 54.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 4.5e-55 219.5 238 48.3
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.6e-52 211.1 294 39.8
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-52 210.7 279 40.9
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 2.7e-52 210.3 248 46.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.0e-51 208.4 230 45.7
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.3e-51 208.0 230 45.7
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.3e-51 208.0 255 42.7
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.0e-51 206.8 220 45.9
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.9e-51 206.5 245 43.7
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 6.7e-51 205.7 267 41.6
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 6.7e-51 205.7 267 41.6
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 6.7e-51 205.7 267 41.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 8.7e-51 205.3 230 45.7
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-50 204.9 290 40.3
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.3e-50 203.0 176 56.8
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 9.7e-50 201.8 230 44.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.6e-49 201.1 266 43.2
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.6e-49 201.1 262 43.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 6.9e-48 195.7 137 65.0
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.5e-47 194.5 194 51.0
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 5.9e-47 192.6 208 48.1
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 5.0e-46 189.5 206 46.6
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.1e-44 184.1 267 38.6
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.0e-42 177.6 116 69.8
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.8e-40 171.0 258 38.8
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 6.1e-36 156.0 210 40.0
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 5.0e-30 136.3 191 40.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.8e-25 120.6 185 35.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.6e-20 104.8 89 59.6
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 6.1e-20 102.8 112 42.9
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 8.8e-19 99.0 141 37.6
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.3e-09 68.6 231 25.5
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.1e-08 65.5 61 54.1


User provided reference genes

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