Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_27150 Physcomitrium patens HOM05D001447 ORTHO05D309656 6.1e-126 454.1 226 100.0
Atru.chr10.1729 Acer truncatum HOM05D001447 ORTHO05D005061 1.1e-10 71.2 93 39.8
Pp3c10_2940 Physcomitrium patens HOM05D001447 ORTHO05D005061 7.2e-10 68.6 44 72.7
Pp3c2_15490 Physcomitrium patens HOM05D001447 ORTHO05D005061 7.2e-10 68.6 44 72.7
THA.LOC104814243 Tarenaya hassleriana HOM05D001447 ORTHO05D005061 7.2e-10 68.6 98 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1378 Anthoceros agrestis HOM05D001447 ORTHO05D005061 9.4e-10 68.2 44 70.5
CANSAT35G0876 Cannabis sativa HOM05D001447 ORTHO05D005061 2.1e-09 67.0 70 47.1
Ciclev10015348m.g Citrus clementina HOM05D001447 ORTHO05D005061 2.7e-09 66.6 44 68.2
Eucgr.D00551 Eucalyptus grandis HOM05D001447 ORTHO05D005061 3.6e-09 66.2 85 42.4
Mapoly0040s0099 Marchantia polymorpha HOM05D001447 ORTHO05D005061 3.6e-09 66.2 44 68.2
Cpa.g.sc7.16 Carica papaya HOM05D001447 ORTHO05D005061 4.7e-09 65.9 71 49.3
VMungo0540G1497 Vigna mungo HOM05D001447 ORTHO05D005061 4.7e-09 65.9 94 37.2
Aa31LG9G6980 Aethionema arabicum HOM05D001447 ORTHO05D005061 8.0e-09 65.1 70 47.1
Lj6g0020481 Lotus japonicus HOM05D001447 ORTHO05D005061 8.0e-09 65.1 101 36.6
MSTRG.7388 Avicennia marina HOM05D001447 ORTHO05D005061 1.0e-08 64.7 74 45.9
Glyma.13G171800 Glycine max HOM05D001447 ORTHO05D005061 1.0e-08 64.7 73 47.9
Actinidia07629 Actinidia chinensis HOM05D001447 ORTHO05D005061 1.4e-08 64.3 70 47.1
Cre06.g306300 Chlamydomonas reinhardtii HOM05D001447 ORTHO05D005061 1.4e-08 64.3 55 56.4
Dinv04637 Davidia involucrata HOM05D001447 ORTHO05D005061 1.4e-08 64.3 93 37.6
Dinv17393 Davidia involucrata HOM05D001447 ORTHO05D005061 1.4e-08 64.3 93 37.6
Thhalv10000878m.g Eutrema salsugineum HOM05D001447 ORTHO05D005061 1.4e-08 64.3 94 39.4
Nn4g22114 Nelumbo nucifera HOM05D001447 ORTHO05D005061 1.4e-08 64.3 70 45.7
Psat1g200160 Pisum sativum HOM05D001447 ORTHO05D005061 1.4e-08 64.3 101 37.6
Psat7g118680 Pisum sativum HOM05D001447 ORTHO05D005061 1.4e-08 64.3 66 50.0
Sed0013081 Sechium edule HOM05D001447 ORTHO05D005061 1.4e-08 64.3 87 44.8
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
arahy.Tifrunner.gnm1.ann1.V1EAJK Arachis hypogaea HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
CDE02G1568 Ceratophyllum demersum HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
CDE08G0265 Ceratophyllum demersum HOM05D001447 ORTHO05D005061 1.8e-08 63.9 70 47.1
Ca_00416_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Ca_26047_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Cc07_g18500 Coffea canephora HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Glyma.07G204300 Glycine max HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Glyma.13G232500 Glycine max HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Lj6g0004465 Lotus japonicus HOM05D001447 ORTHO05D005061 1.8e-08 63.9 94 37.2
MBI06_g31399_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Medtr4g087895 Medicago truncatula HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Phvul.003G057600 Phaseolus vulgaris HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Phvul.006G178400 Phaseolus vulgaris HOM05D001447 ORTHO05D005061 1.8e-08 63.9 90 37.8
Rhsim02G0140300 Rhododendron simsii HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
SGA_v2.0_scaffold1G00008 Striga asiatica HOM05D001447 ORTHO05D005061 1.8e-08 63.9 74 48.6
TPR.G16264 Trifolium pratense HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
VMungo0251G0134 Vigna mungo HOM05D001447 ORTHO05D005061 1.8e-08 63.9 44 63.6
Aa31LG6G1230 Aethionema arabicum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Ah.09g237830 Amaranthus hybridus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Aqoxy4G00488 Aquilegia oxysepala HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AL7G35800 Arabidopsis lyrata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AL8G12600 Arabidopsis lyrata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AT4G18480 Arabidopsis thaliana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AT5G45930 Arabidopsis thaliana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
MSTRG.16140 Avicennia marina HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
EL10Ac8g20486 Beta vulgaris HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BcaC03g16800 Brassica carinata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BcaC06g30582 Brassica carinata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 69 46.4
BcaC09g51503 Brassica carinata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BcaNung02708 Brassica carinata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BcaNung05872 Brassica carinata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
A01p10450 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
A02p29450 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
A03p51320 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
C01p12430 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
C02p46720 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
C07p49730 Brassica napus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BolC1t01217H Brassica oleracea HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BolC2t10724H Brassica oleracea HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BolC7t45474H Brassica oleracea HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BraA01t00991Z Brassica rapa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BraA02t07972Z Brassica rapa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
BraA03t14213Z Brassica rapa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Carub.0007s2275 Capsella rubella HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Carub.0008s0199 Capsella rubella HOM05D001447 ORTHO05D005061 2.3e-08 63.5 69 44.9
CARHR176000 Cardamine hirsuta HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
CARHR225320 Cardamine hirsuta HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Cfa000573 Carpinus fangiana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AUR62031140 Chenopodium quinoa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
AUR62036545 Chenopodium quinoa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
ClCG01G023530 Citrullus lanatus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
COL.COLO4_31349 Corchorus olitorius HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
COL.COLO4_36106 Corchorus olitorius HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
COL.COLO4_36107 Corchorus olitorius HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Haze_06277 Corylus avellana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
CsaV3_6G050640 Cucumis sativus L. HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
DCAR_004025 Daucus carota HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
ECA234G2254 Erigeron canadensis HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Migut.M01066 Erythranthe guttata HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Eucgr.D00547 Eucalyptus grandis HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Thhalv10025291m.g Eutrema salsugineum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
FvH4_3g08130 Fragaria vesca HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
FAN11G0520 Fragaria x ananassa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
FAN16G1600 Fragaria x ananassa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
FAN21G0087 Fragaria x ananassa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
FAN25G0670 Fragaria x ananassa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Glyma.15G080200 Glycine max HOM05D001447 ORTHO05D005061 2.3e-08 63.5 94 36.2
Gohir.A06G200700 Gossypium hirsutum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Gohir.A10G030400 Gossypium hirsutum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Gohir.D06G208200 Gossypium hirsutum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Gohir.D10G031300 Gossypium hirsutum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 70 45.7
Gorai.010G242400 Gossypium raimondii HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Gorai.011G032900 Gossypium raimondii HOM05D001447 ORTHO05D005061 2.3e-08 63.5 70 45.7
HanXRQChr11g0327161 Helianthus annuus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 70 45.7
HanXRQChr17g0556041 Helianthus annuus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Lsat_1_v5_gn_4_50480 Lactuca sativa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Lj1A1196T40 Lonicera japonica HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Lalb_Chr18g0059221 Lupinus albus HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
MD05G1304900 Malus domestica HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
MD10G1284000 Malus domestica HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Manes.16G035500 Manihot esculenta HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Manes.17G053100 Manihot esculenta HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Medtr2g015390 Medicago truncatula HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Nitab4.5_0005897g0020 Nicotiana tabacum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Nitab4.5_0006237g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Oeu043095.1 Olea europaea HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Os03g0563300 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
PSO063G0490 Papaver somniferum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
PSO782G2058 Papaver somniferum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Peaxi162Scf00269g00514 Petunia axillaris HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Potri.011G063400 Populus trichocarpa HOM05D001447 ORTHO05D005061 2.3e-08 63.5 57 56.1
Prupe.4G057500 Prunus persica HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
PGR004G1605 Punica granatum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
PGR046G0002 Punica granatum HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
RcHm_v2.0_Chr5g0010061 Rosa chinensis HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Sabra04G0034800 Salix brachista HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
SalBow8G5070 Salvia bowleyana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Sp7g15540 Schrenkiella parvula HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
Sed0025458 Sechium edule HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
THA.LOC104806148 Tarenaya hassleriana HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
TWI38G2261 Tripterygium wilfordii HOM05D001447 ORTHO05D005061 2.3e-08 63.5 66 51.5
TWI63G0441 Tripterygium wilfordii HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
vmacro15960 Vaccinium macrocarpon HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
GSVIVG01021169001 Vitis vinifera HOM05D001447 ORTHO05D005061 2.3e-08 63.5 70 47.1
Zm00001eb407780 Zea mays HOM05D001447 ORTHO05D005061 2.3e-08 63.5 44 63.6
arahy.Tifrunner.gnm1.ann1.55WK8U Arachis hypogaea HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
arahy.Tifrunner.gnm1.ann1.8VV3Y6 Arachis hypogaea HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
CAN.G168.8 Capsicum annuum HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
CiPaw.09G067200 Carya illinoinensis HOM05D001447 ORTHO05D005061 3.0e-08 63.2 76 44.7
CiPaw.10G056900 Carya illinoinensis HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
QL05p044197 Quercus lobata HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
Sc17g0005810 Simmondsia chinensis HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
Solyc10g008740.3 Solanum lycopersicum HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
Sopen10g004510 Solanum pennellii HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
PGSC0003DMG400026627 Solanum tuberosum HOM05D001447 ORTHO05D005061 3.0e-08 63.2 44 63.6
TPR.G11795 Trifolium pratense HOM05D001447 ORTHO05D005061 3.0e-08 63.2 94 37.2
Potri.004G053400 Populus trichocarpa HOM05D001447 ORTHO05D005061 4.0e-08 62.8 44 61.4
HPP92_008742 Vanilla planifolia HOM05D001447 ORTHO05D005061 4.0e-08 62.8 44 63.6
CSS0004540 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005061 6.8e-08 62.0 44 61.4
Duzib192G0898 Durio zibethinus HOM05D001447 ORTHO05D005061 8.8e-08 61.6 44 61.4
Thecc.06G175800 Theobroma cacao HOM05D001447 ORTHO05D005061 8.8e-08 61.6 44 61.4
Hma1.2p1_0155F.1_g068420 Hydrangea macrophylla HOM05D001447 ORTHO05D005061 1.2e-07 61.2 44 59.1
ATR1098G051 Amborella trichopoda HOM05D001447 ORTHO05D005061 2.6e-07 60.1 42 61.9
MCO01G614 Micromonas commoda HOM05D001447 ORTHO05D005061 5.7e-07 58.9 44 56.8
PRCOL_00004252 Prasinoderma coloniale HOM05D001447 ORTHO05D005061 1.7e-06 57.4 47 55.3


User provided reference genes

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