Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_26880 Physcomitrium patens HOM05D007058 ORTHO05D009036 1.3e-244 849.4 442 100.0
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 8.0e-114 414.8 379 56.2
Mapoly0014s0018 Marchantia polymorpha HOM05D007058 ORTHO05D009036 8.1e-106 388.3 345 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2408 Anthoceros agrestis HOM05D007058 ORTHO05D009036 6.0e-93 345.5 341 54.8
SMO271G0182 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 7.8e-93 345.1 380 49.2
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 1.1e-91 341.3 367 49.3
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 3.8e-87 326.2 366 46.2
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 8.4e-87 325.1 366 46.2
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.4e-86 324.3 384 44.3
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 1.9e-86 323.9 379 45.9
SMO308G0041 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 1.9e-86 323.9 416 45.0
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 7.1e-86 322.0 380 45.8
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 1.2e-85 321.2 367 45.2
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 1.6e-85 320.9 367 45.8
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 8.7e-84 315.1 384 43.5
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 1.1e-83 314.7 393 44.8
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.5e-83 313.5 426 42.0
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 1.6e-82 310.8 406 41.4
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 1.6e-82 310.8 390 43.3
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 3.6e-82 309.7 408 41.4
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 6.2e-82 308.9 371 44.5
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 1.4e-81 307.8 414 41.3
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 1.8e-81 307.4 389 43.2
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 4.0e-81 306.2 410 42.4
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 4.0e-81 306.2 385 42.6
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 9.0e-81 305.1 410 42.4
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 3.4e-80 303.1 389 41.9
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 4.5e-80 302.8 375 42.7
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 5.8e-80 302.4 378 43.7
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 7.6e-80 302.0 383 42.6
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 7.6e-80 302.0 371 44.2
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 2.9e-79 300.1 369 42.8
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 2.9e-79 300.1 375 42.9
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 4.9e-79 299.3 397 42.6
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 4.9e-79 299.3 368 43.8
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 4.9e-79 299.3 400 42.2
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 4.9e-79 299.3 371 43.4
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 6.4e-79 298.9 410 41.5
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 8.4e-79 298.5 382 42.9
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 1.1e-78 298.1 370 42.4
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 1.1e-78 298.1 369 44.4
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 2.4e-78 297.0 372 43.5
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 3.2e-78 296.6 374 43.3
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 3.2e-78 296.6 389 39.8
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 9.3e-78 295.0 372 43.5
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 1.2e-77 294.7 370 42.2
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 1.6e-77 294.3 392 40.1
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 1.6e-77 294.3 371 42.6
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.6e-77 294.3 401 40.4
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.6e-77 294.3 374 43.6
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.6e-77 294.3 372 43.5
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 3.5e-77 293.1 368 41.8
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 2.3e-76 290.4 375 43.7
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 2.3e-76 290.4 395 39.7
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 5.1e-76 289.3 372 43.0
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 4.3e-75 286.2 388 40.5
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 7.4e-75 285.4 371 42.6
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 2.1e-74 283.9 388 39.9
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 2.8e-74 283.5 369 41.5
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 6.2e-74 282.3 372 40.9
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 6.2e-74 282.3 369 41.7
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 5.3e-73 279.3 369 40.9
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 1.5e-72 277.7 398 41.5
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 2.0e-72 277.3 369 40.7
CBR_g74658 Chara braunii HOM05D007058 ORTHO05D009036 2.6e-72 276.9 588 33.8
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 3.4e-72 276.6 372 40.3
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 3.2e-70 270.0 373 41.6
Gorai.001G067900 Gossypium raimondii HOM05D007058 ORTHO05D009036 3.2e-70 270.0 304 46.7
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 7.1e-70 268.9 388 39.7
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 9.3e-70 268.5 344 41.3
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 1.8e-68 264.2 372 39.2
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 4.3e-67 259.6 385 39.2
AUR62029919 Chenopodium quinoa HOM05D007058 ORTHO05D009036 5.7e-67 259.2 310 43.5
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 7.4e-67 258.8 384 38.5
MCO02G081 Micromonas commoda HOM05D007058 ORTHO05D009036 1.4e-65 254.6 393 39.9
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 4.1e-65 253.1 393 38.9
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 4.1e-65 253.1 378 38.9
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 6.9e-65 252.3 408 38.7
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 6.9e-65 252.3 407 38.6
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 2.6e-64 250.4 407 39.1
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 4.5e-64 249.6 407 38.8
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 1.3e-63 248.1 373 39.4
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 1.3e-63 248.1 373 39.4
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 6.5e-63 245.7 403 37.7
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 6.5e-63 245.7 389 37.5
PRCOL_00000956 Prasinoderma coloniale HOM05D007058 ORTHO05D009036 2.7e-61 240.4 387 41.3
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 2.5e-59 233.8 335 39.4
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 3.3e-59 233.4 382 37.7
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 7.4e-59 232.3 336 38.4
Rhsim08G0129700 Rhododendron simsii HOM05D007058 ORTHO05D009036 3.0e-52 210.3 268 42.5
FvH4_5g16720 Fragaria vesca HOM05D007058 ORTHO05D009036 3.9e-52 209.9 257 43.6
Glyma.05G242000 Glycine max HOM05D007058 ORTHO05D009036 3.9e-52 209.9 312 39.4
Os01g0516700 Oryza sativa ssp. japonica HOM05D007058 ORTHO05D009036 2.5e-46 190.7 296 38.9
Gohir.D07G064300 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.5e-43 181.4 223 43.9
Zm00001eb132130 Zea mays HOM05D007058 ORTHO05D009036 2.0e-27 127.9 246 33.7
Glyma.08G049500 Glycine max HOM05D007058 ORTHO05D009036 3.4e-27 127.1 183 39.9
Cre12.g527950 Chlamydomonas reinhardtii HOM05D007058 ORTHO05D009036 1.7e-23 114.8 389 27.5
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 2.8e-18 97.4 116 42.2
arahy.Tifrunner.gnm1.ann1.4SU3WD Arachis hypogaea HOM05D007058 ORTHO05D009036 4.1e-17 93.6 131 35.9
CAN.G1074.8 Capsicum annuum HOM05D007058 ORTHO05D009036 4.1e-17 93.6 129 37.2
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 4.3e-14 83.6 78 61.5
Pp3c2_19585 Physcomitrium patens HOM05D007058 ORTHO05D009036 2.3e-12 77.8 85 55.3
SalBow5G0499 Salvia bowleyana HOM05D007058 ORTHO05D010040 9.8e-11 72.4 133 33.8
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 1.1e-06 58.9 79 41.8


User provided reference genes

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