Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 2.9e-177 625.2 325 100.0
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.0e-97 359.4 326 59.2
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.4e-38 164.5 312 32.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.0e-38 161.8 330 32.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.9e-37 159.1 319 31.7
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 5.9e-37 159.1 300 31.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.0e-36 158.3 329 31.6
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-36 158.3 329 31.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.0e-36 158.3 329 31.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.0e-36 158.3 330 32.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.0e-36 158.3 300 31.7
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-36 157.9 331 31.4
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-36 157.1 331 32.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.2e-36 157.1 331 32.3
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.2e-36 157.1 331 32.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.8e-36 156.4 329 31.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.8e-36 156.4 329 31.9
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.8e-36 156.4 329 31.6
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.9e-35 154.1 327 30.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.5e-35 153.7 313 31.9
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 5.5e-35 152.5 317 31.5
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 9.3e-35 151.8 333 31.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 9.3e-35 151.8 322 31.7
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.2e-34 151.4 328 30.5
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-34 151.4 330 31.5
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-34 150.6 330 31.5
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.1e-34 150.6 330 31.5
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.7e-34 150.2 328 30.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.6e-34 149.4 329 30.7
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.9e-34 148.7 336 32.1
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.0e-33 148.3 309 32.0
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-33 147.9 321 31.5
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-33 147.9 321 31.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.3e-33 147.9 317 32.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.3e-33 147.9 298 30.5
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-33 147.5 321 32.1
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.8e-33 147.5 321 31.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-33 147.1 309 29.8
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.3e-33 147.1 314 30.9
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.9e-33 146.4 321 31.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 3.9e-33 146.4 312 29.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 5.1e-33 146.0 299 32.8
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.1e-33 146.0 313 33.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.5e-32 144.4 330 30.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.9e-32 144.1 311 30.2
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.9e-32 144.1 311 29.3
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.3e-32 143.3 315 31.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.3e-32 143.3 334 31.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 3.3e-32 143.3 316 29.4
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 3.3e-32 143.3 318 30.8
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 5.7e-32 142.5 316 32.0
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.7e-32 142.5 321 28.3
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.4e-32 142.1 231 34.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.4e-32 142.1 231 34.6
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 9.7e-32 141.7 317 28.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 9.7e-32 141.7 317 29.0
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.6e-31 141.0 319 30.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.6e-31 141.0 321 31.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.2e-31 140.6 309 29.1
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.8e-31 140.2 316 32.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 4.8e-31 139.4 311 28.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.8e-31 139.4 311 29.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.3e-31 139.0 299 30.4
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 6.3e-31 139.0 294 30.3
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.4e-30 137.9 315 26.7
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.4e-30 137.9 323 31.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.4e-30 137.9 320 30.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-30 137.5 296 32.1
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.4e-30 137.1 318 28.0
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.1e-30 136.7 314 29.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.3e-30 136.0 318 32.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 6.9e-30 135.6 331 28.7
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.9e-30 135.6 325 30.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 6.9e-30 135.6 293 31.1
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 9.1e-30 135.2 321 29.6
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.1e-30 135.2 310 28.1
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.1e-30 135.2 299 28.8
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.1e-30 135.2 321 29.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.2e-29 134.8 299 28.8
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.2e-29 134.8 320 27.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.0e-29 134.0 299 29.4
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.6e-29 133.7 321 29.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.6e-29 133.7 320 29.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.4e-29 133.3 315 28.9
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.5e-29 132.9 277 30.0
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.9e-29 132.5 319 30.4
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.0e-28 131.7 331 29.0
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-28 131.3 296 31.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.2e-28 130.6 296 30.4
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.2e-28 130.6 320 30.0
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.8e-28 129.8 319 28.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.0e-28 129.4 318 28.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 5.0e-28 129.4 293 30.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 6.5e-28 129.0 322 30.7
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.5e-28 129.0 316 28.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 8.5e-28 128.6 309 27.2
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-27 128.3 279 31.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-27 127.5 335 29.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-27 127.5 301 30.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 7.2e-27 125.6 321 27.4
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.2e-26 124.8 325 27.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.6e-26 124.4 325 29.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.6e-26 124.4 296 29.4
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 3.6e-26 123.2 313 29.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 4.6e-26 122.9 239 31.4
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.0e-25 121.7 312 28.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.8e-25 120.9 319 28.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 3.9e-25 119.8 281 29.5
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 5.1e-25 119.4 316 28.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.8e-25 118.6 323 26.9
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.6e-24 117.1 268 27.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.4e-24 116.3 333 27.0
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.4e-24 115.5 323 27.9
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.3e-23 114.8 325 29.5
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.8e-23 113.6 323 26.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.8e-23 113.6 296 28.0
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.8e-23 113.6 321 26.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 3.7e-23 113.2 314 25.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.7e-23 113.2 326 25.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.3e-23 112.5 219 31.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.1e-22 110.2 345 25.2
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 4.1e-22 109.8 199 34.2
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 6.9e-22 109.0 325 28.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.9e-22 109.0 297 27.9
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.9e-22 109.0 317 27.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.6e-21 107.1 310 26.5
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.4e-21 106.7 214 30.4
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.9e-20 103.6 320 27.8
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 8.5e-20 102.1 284 30.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.5e-19 100.5 321 26.2
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 3.2e-19 100.1 272 29.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.2e-19 99.8 297 28.6
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.6e-18 97.8 301 28.2
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.7e-18 97.1 320 26.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 3.6e-18 96.7 310 24.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 7.9e-18 95.5 250 27.2
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.0e-17 93.6 319 24.1
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-16 91.3 361 24.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.3e-12 78.2 222 27.5
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 5.3e-06 56.2 170 27.1


User provided reference genes

Program Settings