Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 6.9e-140 500.7 272 100.0
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.6e-117 426.4 275 85.5
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.5e-81 307.0 288 62.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.1e-73 280.8 227 62.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 8.3e-69 264.6 247 55.9
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.8e-68 263.5 244 56.1
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.8e-68 263.5 244 56.1
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.1e-68 262.7 247 55.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 5.4e-68 261.9 244 55.7
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 7.0e-68 261.5 247 55.1
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 7.0e-68 261.5 247 55.1
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 9.2e-68 261.2 244 55.3
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.0e-67 260.0 247 54.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 2.7e-67 259.6 252 55.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.7e-66 256.9 248 54.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.9e-66 256.1 250 54.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.8e-66 255.8 248 54.0
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.0e-66 255.4 244 54.9
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 8.6e-66 254.6 263 54.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.5e-65 253.8 250 54.4
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.5e-65 253.8 250 54.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-65 253.4 244 54.5
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.5e-65 253.1 259 52.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 4.3e-65 252.3 267 50.9
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 4.3e-65 252.3 221 56.6
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.8e-64 249.6 179 64.8
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 6.1e-64 248.4 247 52.2
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 6.1e-64 248.4 228 55.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.0e-63 247.7 215 55.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.0e-63 247.7 243 54.3
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.4e-63 247.3 265 50.2
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.0e-63 246.1 266 55.3
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 3.0e-63 246.1 200 57.5
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.0e-63 245.7 251 52.6
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 8.9e-63 244.6 210 55.2
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.2e-62 244.2 258 52.3
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.2e-62 244.2 213 54.5
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.2e-62 244.2 249 50.2
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.5e-62 243.8 244 52.0
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.5e-62 243.8 249 53.0
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.5e-62 243.8 257 51.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.5e-62 243.8 238 55.5
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-62 243.4 234 54.3
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.0e-62 243.4 261 50.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.6e-62 243.0 200 58.5
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.6e-62 243.0 248 53.6
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 2.6e-62 243.0 251 53.0
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.4e-62 242.7 258 52.3
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.4e-62 242.3 234 54.3
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.4e-62 242.3 234 54.3
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.4e-62 242.3 249 51.4
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.7e-62 241.9 226 52.2
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 5.7e-62 241.9 206 56.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 7.5e-62 241.5 234 54.3
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 7.5e-62 241.5 238 54.2
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 9.8e-62 241.1 242 53.7
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.3e-61 240.7 244 52.9
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 1.3e-61 240.7 251 50.6
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-61 240.4 240 52.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-61 240.4 240 52.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.7e-61 240.4 240 52.9
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.7e-61 240.4 246 52.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.2e-61 240.0 247 53.0
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-61 239.6 234 53.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-61 239.6 234 53.8
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 3.7e-61 239.2 257 49.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 4.9e-61 238.8 234 53.0
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 6.4e-61 238.4 264 50.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 6.4e-61 238.4 238 52.1
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 8.3e-61 238.0 242 53.7
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.1e-60 237.7 197 57.4
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.4e-60 237.3 264 50.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.4e-60 237.3 242 53.7
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.4e-60 237.3 220 51.4
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.8e-60 236.9 250 50.0
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.8e-60 236.9 246 52.0
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.8e-60 236.9 235 52.3
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.8e-60 236.9 196 56.1
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 3.2e-60 236.1 238 52.1
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 4.1e-60 235.7 250 51.6
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.1e-60 235.7 248 52.0
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 5.4e-60 235.3 244 51.2
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 5.4e-60 235.3 242 50.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 5.4e-60 235.3 238 52.1
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.0e-60 235.0 251 49.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 9.2e-60 234.6 249 51.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 9.2e-60 234.6 247 50.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.2e-59 234.2 302 46.4
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.2e-59 234.2 262 50.4
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.0e-59 233.4 253 51.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 3.5e-59 232.6 232 53.4
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 3.5e-59 232.6 248 51.6
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.5e-59 232.6 210 55.7
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.9e-59 231.9 251 48.6
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 5.9e-59 231.9 204 55.9
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 7.8e-59 231.5 254 48.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 7.8e-59 231.5 240 50.0
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.0e-58 231.1 213 53.5
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.3e-58 230.7 236 52.5
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 1.7e-58 230.3 246 50.4
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.3e-58 229.9 251 50.2
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 5.0e-58 228.8 245 49.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 6.6e-58 228.4 210 53.3
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.3e-55 219.9 238 52.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 6.8e-55 218.4 168 58.9
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 5.8e-54 215.3 194 53.1
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.1e-52 211.1 194 52.1
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.7e-50 203.8 261 44.4
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 2.3e-50 203.4 197 54.8
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 2.3e-50 203.4 197 54.8
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 6.2e-48 195.3 145 63.4
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.6e-46 189.9 252 46.4
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-45 187.2 190 51.6
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.1e-44 184.5 242 44.6
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 6.6e-42 175.3 228 44.7
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 7.3e-41 171.8 153 47.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 2.1e-40 170.2 165 45.5
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.8e-39 167.2 129 62.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.9e-36 157.1 176 48.3
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.8e-31 140.6 171 42.1
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.7e-26 124.0 98 61.2
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 8.7e-26 121.7 99 56.6
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.4e-20 103.6 98 53.1
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.4e-20 102.4 154 38.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.0e-19 99.0 244 32.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.0e-19 99.0 244 32.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.8e-18 97.4 244 31.6
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.8e-15 87.4 67 53.7
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 9.9e-14 81.6 157 30.6
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 5.5e-12 75.9 75 44.0
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.3e-09 66.2 57 50.9
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.7e-08 63.2 54 48.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 4.5e-06 56.2 40 65.0


User provided reference genes

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