Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 0.0e+00 1778.5 939 100.0
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.3e-241 840.5 965 51.9
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 3.3e-218 762.7 872 52.5
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.2e-159 568.2 952 41.7
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 4.8e-140 503.1 773 41.0
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 4.0e-102 377.1 959 30.9
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 6.5e-97 359.8 708 33.3
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 8.3e-76 289.7 731 32.0
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.5e-69 266.5 655 28.4
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 7.5e-69 266.5 655 28.4
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 3.7e-68 264.2 755 27.3
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 6.4e-68 263.5 773 27.3
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 8.3e-68 263.1 652 28.7
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 8.3e-68 263.1 692 28.6
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 2.4e-67 261.5 666 28.7
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 3.2e-67 261.2 663 29.6
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 5.4e-67 260.4 781 27.4
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 2.0e-66 258.5 688 29.9
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 2.7e-66 258.1 768 27.7
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 3.5e-66 257.7 573 31.1
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 3.5e-66 257.7 683 29.7
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 7.8e-66 256.5 637 28.1
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 7.8e-66 256.5 842 26.8
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 1.3e-65 255.8 789 28.9
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.7e-65 255.4 827 26.6
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 2.3e-65 255.0 682 30.6
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.3e-65 255.0 669 28.7
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.0e-65 254.6 726 28.2
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 3.0e-65 254.6 775 27.5
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 3.0e-65 254.6 623 28.1
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 3.0e-65 254.6 664 28.6
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 6.6e-65 253.4 838 27.9
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 8.6e-65 253.1 663 29.1
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.5e-64 252.3 673 28.1
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.9e-64 251.9 703 28.2
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 3.3e-64 251.1 785 27.3
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 4.3e-64 250.8 746 27.5
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 7.3e-64 250.0 664 29.1
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 9.5e-64 249.6 629 29.6
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.2e-63 249.2 773 27.6
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.6e-63 248.8 626 29.6
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.6e-63 248.8 770 26.9
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 2.1e-63 248.4 757 27.3
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 2.1e-63 248.4 680 27.4
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 4.7e-63 247.3 602 29.7
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.7e-63 247.3 770 26.9
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 6.2e-63 246.9 844 25.8
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.1e-62 246.1 586 29.0
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.4e-62 245.7 771 27.9
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 1.8e-62 245.4 698 28.2
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 1.8e-62 245.4 674 27.9
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 2.3e-62 245.0 687 28.2
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 2.3e-62 245.0 697 26.8
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 3.1e-62 244.6 716 28.5
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 3.1e-62 244.6 675 27.7
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.1e-62 244.6 629 29.3
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 4.0e-62 244.2 667 29.1
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 5.2e-62 243.8 737 28.9
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.2e-61 242.7 663 27.8
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 1.5e-61 242.3 621 28.7
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.5e-61 242.3 584 28.8
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 2.6e-61 241.5 747 26.4
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 3.4e-61 241.1 916 26.7
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 4.4e-61 240.7 874 27.5
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 4.4e-61 240.7 848 28.2
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 5.8e-61 240.4 912 25.7
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 5.8e-61 240.4 789 27.4
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 7.5e-61 240.0 625 30.6
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 7.5e-61 240.0 761 27.1
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 9.8e-61 239.6 905 26.6
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 9.8e-61 239.6 729 27.4
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 9.8e-61 239.6 668 28.6
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.3e-60 239.2 665 29.0
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.7e-60 238.8 693 28.9
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.2e-60 238.4 658 27.7
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 2.9e-60 238.0 731 27.1
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 6.4e-60 236.9 827 27.4
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.1e-59 236.1 670 27.2
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 1.1e-59 236.1 695 26.6
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.9e-59 235.3 897 26.3
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 1.9e-59 235.3 757 27.5
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 1.9e-59 235.3 760 26.6
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.4e-59 235.0 783 25.9
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 3.2e-59 234.6 915 26.0
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 5.4e-59 233.8 657 27.7
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 7.1e-59 233.4 662 27.8
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 1.6e-58 232.3 746 27.9
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.6e-58 232.3 879 26.5
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 2.1e-58 231.9 911 25.6
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 2.1e-58 231.9 911 25.6
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 2.1e-58 231.9 918 26.3
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 2.1e-58 231.9 744 27.2
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 2.1e-58 231.9 779 27.6
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 2.7e-58 231.5 716 25.4
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 2.7e-58 231.5 738 28.0
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 3.5e-58 231.1 780 26.4
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 7.8e-58 229.9 820 25.4
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.0e-57 229.6 796 27.0
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 1.0e-57 229.6 689 26.9
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 1.3e-57 229.2 765 27.1
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 1.7e-57 228.8 657 27.4
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 3.9e-57 227.6 683 27.2
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 5.1e-57 227.3 661 27.5
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 5.1e-57 227.3 894 25.7
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 8.6e-57 226.5 702 26.5
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.1e-56 226.1 865 25.9
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.5e-56 225.7 710 26.5
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 1.5e-56 225.7 855 26.0
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 2.5e-56 224.9 867 26.1
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 3.3e-56 224.6 547 29.8
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 4.3e-56 224.2 659 25.9
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 9.5e-56 223.0 741 26.0
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.1e-55 221.9 579 27.8
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 2.1e-55 221.9 621 29.1
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 2.1e-55 221.9 912 26.1
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 4.7e-55 220.7 716 26.4
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 4.7e-55 220.7 736 26.8
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 8.1e-55 219.9 712 26.4
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 8.1e-55 219.9 654 26.8
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 8.1e-55 219.9 730 27.8
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 1.1e-54 219.5 696 27.0
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.4e-54 219.2 622 28.8
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 8.9e-54 216.5 651 26.1
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 2.0e-53 215.3 714 27.3
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.0e-53 215.3 824 25.2
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 4.4e-53 214.2 703 27.3
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 5.8e-53 213.8 535 29.9
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 1.3e-52 212.6 684 27.9
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 1.7e-52 212.2 607 27.0
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 2.9e-52 211.5 914 25.7
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 2.9e-52 211.5 603 27.7
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.9e-51 208.8 842 25.3
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 2.4e-51 208.4 626 27.0
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 4.1e-51 207.6 877 24.9
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 5.4e-51 207.2 576 29.7
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 3.9e-49 201.1 623 26.2
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 8.6e-49 199.9 738 25.6
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.5e-48 199.1 705 25.8
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 1.9e-48 198.7 836 25.0
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 2.1e-47 195.3 912 25.2
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 3.1e-46 191.4 628 26.6
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 3.1e-46 191.4 629 27.5
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.2e-45 189.5 604 26.2
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 3.8e-44 184.5 955 24.0
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 1.1e-43 183.0 383 30.5
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.2e-43 181.4 444 30.0
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 9.3e-43 179.9 460 31.5
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 1.3e-41 176.0 537 29.2
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 4.3e-40 171.0 285 33.0
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.5e-37 162.5 590 26.3
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.1e-35 156.4 416 27.2
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.4e-35 156.0 523 27.0
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 9.3e-35 153.3 862 21.5
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 1.6e-34 152.5 499 26.7
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 7.9e-34 150.2 462 28.8
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 3.6e-31 141.4 474 25.9
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 2.7e-18 98.6 671 22.4
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 4.6e-18 97.8 93 40.9
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 3.0e-17 95.1 281 31.3
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 8.7e-17 93.6 318 26.1
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 8.2e-15 87.0 129 36.4
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.1e-14 85.1 305 24.9
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 6.9e-14 84.0 146 34.9
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-13 83.2 291 27.5
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 5.9e-13 80.9 129 35.7
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 6.5e-12 77.4 161 33.5
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 1.1e-11 76.6 161 32.9
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 1.2e-10 73.2 222 24.3
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 6.7e-09 67.4 324 21.6
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.3e-08 65.1 118 34.7
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 5.7e-08 64.3 65 41.5
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 4.8e-07 61.2 109 30.3
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 6.3e-07 60.8 88 36.4
arahy.Tifrunner.gnm1.ann1.PE1W7W Arachis hypogaea HOM05D003493 ORTHO05D003980 6.9e-06 57.4 84 36.9


User provided reference genes

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