Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_25110 Physcomitrium patens HOM05D001705 ORTHO05D002725 9.6e-118 427.2 272 100.0
Pp3c10_2370 Physcomitrium patens HOM05D001705 ORTHO05D000029 3.5e-51 206.1 215 60.0
Pp3c4_1760 Physcomitrium patens HOM05D022175 ORTHO05D014010 8.4e-21 105.1 208 35.1
Pp3c3_29330 Physcomitrium patens HOM05D000071 ORTHO05D000029 4.6e-19 99.4 207 39.6
Mapoly0096s0031 Marchantia polymorpha HOM05D001705 ORTHO05D002725 9.3e-12 75.1 166 34.3
ClCG11G008390 Citrullus lanatus HOM05D001705 ORTHO05D002725 8.7e-10 68.6 143 38.5
Gorai.012G117100 Gossypium raimondii HOM05D000053 ORTHO05D000448 3.3e-09 66.6 165 31.5
Peaxi162Scf00434g00043 Petunia axillaris HOM05D000053 ORTHO05D000448 4.3e-09 66.2 159 32.7
Mapoly0008s0264 Marchantia polymorpha HOM05D001705 ORTHO05D002725 7.4e-09 65.5 165 30.9
Mapoly0054s0114 Marchantia polymorpha HOM05D001705 ORTHO05D014010 9.6e-09 65.1 111 37.8
CiPaw.14G095100 Carya illinoinensis HOM05D000053 ORTHO05D000448 1.6e-08 64.3 162 31.5
Haze_21082 Corylus avellana HOM05D000053 ORTHO05D000448 1.6e-08 64.3 153 33.3
Nn1g03278 Nelumbo nucifera HOM05D001705 ORTHO05D002725 2.1e-08 63.9 142 35.2
Mapoly0052s0127 Marchantia polymorpha HOM05D000071 ORTHO05D014010 2.8e-08 63.5 161 31.7
CAN.G625.35 Capsicum annuum HOM05D001705 ORTHO05D002725 3.7e-08 63.2 152 33.6
FAN03G1688 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.7e-08 63.2 154 31.2
Gohir.A11G292941 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.7e-08 63.2 171 31.0
Haze_21083 Corylus avellana HOM05D000053 ORTHO05D000448 4.8e-08 62.8 143 34.3
Gohir.D11G308200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.8e-08 62.8 175 31.4
arahy.Tifrunner.gnm1.ann1.F3E022 Arachis hypogaea HOM05D000053 ORTHO05D000035 6.2e-08 62.4 113 37.2
arahy.Tifrunner.gnm1.ann1.I63QCE Arachis hypogaea HOM05D000053 ORTHO05D000035 6.2e-08 62.4 157 33.8
Duzib177G0768 Durio zibethinus HOM05D000071 ORTHO05D000029 6.2e-08 62.4 168 31.0
LjContig00272g0011467 Lotus japonicus HOM05D000053 ORTHO05D000035 6.2e-08 62.4 117 39.3
Peaxi162Scf00078g00710 Petunia axillaris HOM05D001705 ORTHO05D002725 6.2e-08 62.4 161 32.9
TWI09G0221 Tripterygium wilfordii HOM05D000071 ORTHO05D000029 6.2e-08 62.4 154 33.1
arahy.Tifrunner.gnm1.ann1.XTV6UZ Arachis hypogaea HOM05D000053 ORTHO05D000035 8.1e-08 62.0 155 32.9
Haze_24149 Corylus avellana HOM05D000053 ORTHO05D000448 8.1e-08 62.0 162 29.6
Lsat_1_v5_gn_8_157700 Lactuca sativa HOM05D000071 ORTHO05D000029 8.1e-08 62.0 139 38.8
QL07p034536 Quercus lobata HOM05D000053 ORTHO05D000448 8.1e-08 62.0 145 31.7
THA.LOC104813325 Tarenaya hassleriana HOM05D000071 ORTHO05D000029 8.1e-08 62.0 172 30.2
Duzib093G1302 Durio zibethinus HOM05D000053 ORTHO05D000448 1.1e-07 61.6 149 29.5
Gohir.D11G300703 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.1e-07 61.6 160 31.2
Duzib177G0555 Durio zibethinus HOM05D000071 ORTHO05D000029 1.8e-07 60.8 146 32.2
Gohir.A11G293982 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.8e-07 60.8 168 28.6
ClCG10G022360 Citrullus lanatus HOM05D000053 ORTHO05D000448 2.4e-07 60.5 125 32.0
Haze_21868 Corylus avellana HOM05D000053 ORTHO05D000448 2.4e-07 60.5 156 30.1
arahy.Tifrunner.gnm1.ann1.24K8LL Arachis hypogaea HOM05D000053 ORTHO05D000035 3.1e-07 60.1 113 38.1
arahy.Tifrunner.gnm1.ann1.WWL8LR Arachis hypogaea HOM05D000053 ORTHO05D000448 3.1e-07 60.1 147 29.3
CiPaw.03G013800 Carya illinoinensis HOM05D001705 ORTHO05D002725 3.1e-07 60.1 90 40.0
Gorai.007G338900 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.1e-07 60.1 163 29.4
QL09p001766 Quercus lobata HOM05D001705 ORTHO05D002725 3.1e-07 60.1 94 42.6
Solyc12g009520.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 3.1e-07 60.1 143 33.6
arahy.Tifrunner.gnm1.ann1.S3Z82H Arachis hypogaea HOM05D000053 ORTHO05D000035 4.0e-07 59.7 152 33.6
Haze_05756 Corylus avellana HOM05D000053 ORTHO05D000448 4.0e-07 59.7 157 29.3
Peaxi162Scf00434g00042 Petunia axillaris HOM05D000053 ORTHO05D000448 4.0e-07 59.7 153 30.1
AagrBONN_evm.TU.Sc2ySwM_228.5287 Anthoceros agrestis HOM05D010742 ORTHO05D014010 5.3e-07 59.3 142 33.1
C01p12600 Brassica napus HOM05D000761 ORTHO05D001062 5.3e-07 59.3 95 38.9
BolC1t01237H Brassica oleracea HOM05D000761 ORTHO05D001062 5.3e-07 59.3 95 38.9
Medtr5g094820 Medicago truncatula HOM05D000121 ORTHO05D000102 5.3e-07 59.3 173 33.5
Peaxi162Scf00078g00078 Petunia axillaris HOM05D001705 ORTHO05D002725 5.3e-07 59.3 164 31.7
SEGI_04712 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 6.9e-07 58.9 98 37.8
Cfa017122 Carpinus fangiana HOM05D000053 ORTHO05D000448 9.0e-07 58.5 89 36.0
CiPaw.08G107500 Carya illinoinensis HOM05D000053 ORTHO05D000448 9.0e-07 58.5 155 29.7
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 9.0e-07 58.5 159 35.2
Haze_05758 Corylus avellana HOM05D000053 ORTHO05D000448 9.0e-07 58.5 160 28.8
Psat0s4150g0040 Pisum sativum HOM05D000053 ORTHO05D000035 9.0e-07 58.5 139 33.1
arahy.Tifrunner.gnm1.ann1.QQT54I Arachis hypogaea HOM05D000053 ORTHO05D000035 1.2e-06 58.2 116 33.6
Haze_24150 Corylus avellana HOM05D000053 ORTHO05D000448 1.2e-06 58.2 162 28.4
CsaV3_2G033250 Cucumis sativus L. HOM05D001705 ORTHO05D002725 1.2e-06 58.2 116 40.5
Glyma.03G087400 Glycine max HOM05D000053 ORTHO05D000448 1.2e-06 58.2 119 33.6
Lsat_1_v5_gn_1_109200 Lactuca sativa HOM05D002120 ORTHO05D002217 1.2e-06 58.2 167 31.7
Medtr5g079980 Medicago truncatula HOM05D000053 ORTHO05D000035 1.2e-06 58.2 154 31.8
Pp3c21_19160 Physcomitrium patens HOM05D001705 ORTHO05D002725 1.2e-06 58.2 155 31.6
Solyc10g052880.1 Solanum lycopersicum HOM05D001705 ORTHO05D002725 1.2e-06 58.2 153 32.0
Sopen10g023690 Solanum pennellii HOM05D001705 ORTHO05D002725 1.2e-06 58.2 153 32.0
arahy.Tifrunner.gnm1.ann1.DKBS4X Arachis hypogaea HOM05D000053 ORTHO05D000035 1.5e-06 57.8 163 32.5
arahy.Tifrunner.gnm1.ann1.K12INL Arachis hypogaea HOM05D000071 ORTHO05D000029 1.5e-06 57.8 122 33.6
CARHR033060 Cardamine hirsuta HOM05D001705 ORTHO05D002725 1.5e-06 57.8 129 31.8
Ciclev10019952m.g Citrus clementina HOM05D001705 ORTHO05D002725 1.5e-06 57.8 134 35.8
Haze_21079 Corylus avellana HOM05D022131 ORTHO05D000448 1.5e-06 57.8 89 36.0
FvH4_3g13620 Fragaria vesca HOM05D000071 ORTHO05D000029 1.5e-06 57.8 140 30.0
Gorai.007G337200 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.5e-06 57.8 154 29.9
RcHm_v2.0_Chr3g0478091 Rosa chinensis HOM05D000053 ORTHO05D000448 1.5e-06 57.8 142 31.7
PGSC0003DMG400016908 Solanum tuberosum HOM05D001705 ORTHO05D002725 1.5e-06 57.8 148 33.1
Thecc.10G091700 Theobroma cacao HOM05D000071 ORTHO05D000029 1.5e-06 57.8 200 27.5
Carub.0003s2745 Capsella rubella HOM05D001705 ORTHO05D002725 2.0e-06 57.4 151 29.1
MELO3C005427.2 Cucumis melo HOM05D000071 ORTHO05D000029 2.0e-06 57.4 160 28.1
SGA_v2.0_scaffold118G32615 Striga asiatica HOM05D001705 ORTHO05D002725 2.0e-06 57.4 135 34.1
arahy.Tifrunner.gnm1.ann1.3VW41E Arachis hypogaea HOM05D000053 ORTHO05D000448 2.6e-06 57.0 149 28.9
arahy.Tifrunner.gnm1.ann1.R600FJ Arachis hypogaea HOM05D000053 ORTHO05D000035 2.6e-06 57.0 157 31.2
arahy.Tifrunner.gnm1.ann1.YJIY2K Arachis hypogaea HOM05D000053 ORTHO05D000035 2.6e-06 57.0 117 37.6
Carub.0004s0336 Capsella rubella HOM05D000053 ORTHO05D000035 2.6e-06 57.0 103 34.0
Cfa017123 Carpinus fangiana HOM05D000053 ORTHO05D000448 2.6e-06 57.0 102 31.4
Duzib174G0003 Durio zibethinus HOM05D000071 ORTHO05D000029 2.6e-06 57.0 206 28.6
Glyma.04G218300 Glycine max HOM05D000094 ORTHO05D001414 2.6e-06 57.0 160 34.4
Gorai.007G337300 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.6e-06 57.0 121 31.4
Lj7A419T37 Lonicera japonica HOM05D001705 ORTHO05D002725 2.6e-06 57.0 94 43.6
arahy.Tifrunner.gnm1.ann1.2ZUN3L Arachis hypogaea HOM05D000053 ORTHO05D000035 3.4e-06 56.6 169 30.2
Cfa009725 Carpinus fangiana HOM05D002120 ORTHO05D002217 3.4e-06 56.6 156 32.7
Haze_16211 Corylus avellana HOM05D000053 ORTHO05D000448 3.4e-06 56.6 121 33.1
Medtr4g046920 Medicago truncatula HOM05D000053 ORTHO05D000035 3.4e-06 56.6 174 32.2
arahy.Tifrunner.gnm1.ann1.L85DV8 Arachis hypogaea HOM05D000053 ORTHO05D000035 4.5e-06 56.2 113 36.3
MELO3C008095.2 Cucumis melo HOM05D001705 ORTHO05D002725 4.5e-06 56.2 115 40.0
Gohir.D11G308100 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.5e-06 56.2 157 28.7
Potri.003G196832 Populus trichocarpa HOM05D000071 ORTHO05D000029 4.5e-06 56.2 175 28.0
QL07p034171 Quercus lobata HOM05D000053 ORTHO05D000448 4.5e-06 56.2 152 27.6
BcaNung06919 Brassica carinata HOM05D000761 ORTHO05D001062 5.8e-06 55.8 96 38.5
Haze_21080 Corylus avellana HOM05D000053 ORTHO05D000448 5.8e-06 55.8 104 34.6
Nn6g34382 Nelumbo nucifera HOM05D001705 ORTHO05D002725 5.8e-06 55.8 121 33.9
Potri.001G262800 Populus trichocarpa HOM05D000071 ORTHO05D000029 5.8e-06 55.8 173 31.2
TAR362G0902 Trochodendron aralioides HOM05D001705 ORTHO05D002725 5.8e-06 55.8 137 36.5
arahy.Tifrunner.gnm1.ann1.67CJVF Arachis hypogaea HOM05D000053 ORTHO05D000035 7.6e-06 55.5 113 37.2
Cfa011579 Carpinus fangiana HOM05D000053 ORTHO05D000448 7.6e-06 55.5 124 31.5
Ciclev10010699m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.6e-06 55.5 140 30.0
Duzib128G0917 Durio zibethinus HOM05D000071 ORTHO05D000029 7.6e-06 55.5 151 30.5
Glyma.16G169200 Glycine max HOM05D000053 ORTHO05D000035 7.6e-06 55.5 158 32.9
Gohir.D11G308250 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.6e-06 55.5 130 30.0
Gorai.009G049000 Gossypium raimondii HOM05D000029 ORTHO05D008509 7.6e-06 55.5 142 32.4
Os02g0156600 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 7.6e-06 55.5 159 28.9
Sed0012359 Sechium edule HOM05D000071 ORTHO05D000029 7.6e-06 55.5 167 29.9
A09p32710 Brassica napus HOM05D001705 ORTHO05D002725 1.0e-05 55.1 113 36.3
BraA09t38811Z Brassica rapa HOM05D001705 ORTHO05D002725 1.0e-05 55.1 113 36.3
Carub.0001s3181 Capsella rubella HOM05D001705 ORTHO05D002725 1.0e-05 55.1 128 34.4
CsaV3_5G005050 Cucumis sativus L. HOM05D000071 ORTHO05D000029 1.0e-05 55.1 162 29.0
FvH4_7g26566 Fragaria vesca HOM05D000071 ORTHO05D000029 1.0e-05 55.1 116 32.8
LjContig00081g0000300 Lotus japonicus HOM05D000053 ORTHO05D000035 1.0e-05 55.1 163 33.1
Sp7g15380 Schrenkiella parvula HOM05D000761 ORTHO05D001062 1.0e-05 55.1 127 35.4
PGSC0003DMG400002885 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.0e-05 55.1 110 38.2


User provided reference genes

Program Settings