Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.9e-145 518.1 254 100.0
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.2e-56 224.2 144 70.1
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.3e-52 210.7 140 70.7
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 9.8e-48 194.5 161 57.8
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.8e-41 173.7 140 57.9
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.1e-38 164.5 138 55.8
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 1.4e-38 164.1 143 54.5
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 3.2e-38 162.9 144 53.5
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 4.1e-38 162.5 131 58.8
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 7.1e-38 161.8 139 53.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 9.2e-38 161.4 144 55.6
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.2e-37 161.0 144 51.4
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.2e-37 161.0 144 51.4
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.2e-37 161.0 144 51.4
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.6e-37 160.6 139 53.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 1.6e-37 160.6 144 56.2
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 4.6e-37 159.1 144 53.5
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 6.0e-37 158.7 110 63.6
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 6.0e-37 158.7 145 53.1
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 6.0e-37 158.7 153 47.7
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 7.8e-37 158.3 138 53.6
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.0e-36 157.9 143 54.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.3e-36 157.5 144 53.5
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.3e-36 157.5 143 55.2
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.7e-36 157.1 144 51.4
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.7e-36 157.1 144 54.2
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.7e-36 157.1 138 52.9
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 3.0e-36 156.4 144 53.5
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.0e-36 156.4 149 53.0
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 3.9e-36 156.0 153 46.4
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 3.9e-36 156.0 110 61.8
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 3.9e-36 156.0 138 52.2
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 3.9e-36 156.0 145 51.7
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 5.1e-36 155.6 145 51.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 5.1e-36 155.6 139 51.1
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.1e-36 155.6 143 53.8
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 6.6e-36 155.2 144 51.4
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 8.6e-36 154.8 154 46.1
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.1e-35 154.5 139 50.4
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.5e-35 154.1 145 51.7
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.5e-35 154.1 145 51.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 1.5e-35 154.1 138 52.2
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.5e-35 154.1 151 49.0
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.9e-35 153.7 147 51.0
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.9e-35 153.7 145 49.7
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.9e-35 153.7 143 53.8
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.5e-35 153.3 117 58.1
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 2.5e-35 153.3 139 52.5
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 3.3e-35 152.9 142 50.7
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 3.3e-35 152.9 141 50.4
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 3.3e-35 152.9 138 51.4
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 3.3e-35 152.9 152 49.3
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 4.3e-35 152.5 144 50.7
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 5.6e-35 152.1 145 51.0
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 9.5e-35 151.4 116 56.0
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 9.5e-35 151.4 139 50.4
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.6e-34 150.6 128 49.2
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.6e-34 150.6 139 50.4
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.6e-34 150.6 144 50.7
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.6e-34 149.4 137 49.6
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 4.7e-34 149.1 139 49.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.1e-33 147.9 110 60.9
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.4e-33 147.5 155 46.5
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.4e-33 147.5 155 46.5
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.4e-33 147.5 120 54.2
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.4e-33 147.5 130 53.1
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.4e-33 147.5 146 50.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.3e-33 146.7 135 48.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 2.3e-33 146.7 139 50.4
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.1e-33 146.4 138 47.1
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 4.0e-33 146.0 146 46.6
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 5.2e-33 145.6 137 49.6
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 8.9e-33 144.8 144 47.2
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.2e-32 144.4 138 47.8
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.5e-32 144.1 107 57.0
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.5e-32 144.1 102 58.8
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.5e-32 144.1 111 60.4
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.5e-32 144.1 132 50.8
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 2.6e-32 143.3 138 50.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 3.4e-32 142.9 142 47.9
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 3.4e-32 142.9 152 46.1
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 4.4e-32 142.5 122 53.3
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 4.4e-32 142.5 122 53.3
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 5.8e-32 142.1 122 53.3
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 7.6e-32 141.7 109 56.9
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.3e-31 141.0 110 57.3
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 2.2e-31 140.2 107 55.1
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.2e-31 140.2 121 52.9
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 2.9e-31 139.8 139 49.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.9e-31 139.8 99 60.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.8e-31 139.4 99 59.6
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 4.9e-31 139.0 121 52.9
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 8.4e-31 138.3 131 48.9
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 5.4e-30 135.6 148 45.9
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 9.2e-30 134.8 140 49.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.2e-29 134.4 133 45.1
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 1.6e-29 134.0 101 55.4
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 4.6e-29 132.5 139 44.6
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 6.0e-29 132.1 125 53.6
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.7e-28 130.6 102 55.9
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 5.1e-28 129.0 102 54.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 5.6e-27 125.6 136 42.6
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 7.3e-27 125.2 142 47.2
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 4.7e-26 122.5 96 54.2
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.1e-25 121.3 142 43.0
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.2e-23 113.6 155 37.4
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 5.1e-20 102.4 126 43.7
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.9e-19 100.5 64 68.8
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.3e-19 99.4 63 61.9
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 8.1e-18 95.1 64 59.4
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.1e-17 93.2 64 56.2
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 9.0e-17 91.7 53 67.9
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 4.5e-16 89.4 128 37.5
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 8.4e-15 85.1 76 53.9
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 4.2e-14 82.8 65 52.3
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 9.3e-14 81.6 63 54.0
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 2.8e-10 70.1 105 41.0
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.7e-07 60.8 92 38.0


User provided reference genes

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