Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.1e-232 807.4 403 100.0
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.1e-177 625.9 403 74.2
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.0e-176 621.7 403 73.2
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 8.3e-166 587.4 399 70.7
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.6e-164 583.2 403 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.0e-164 582.8 403 69.7
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.0e-160 570.5 403 67.5
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.8e-160 569.7 403 66.7
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 8.8e-160 567.4 403 66.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 8.8e-160 567.4 403 66.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 8.8e-160 567.4 403 66.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.2e-159 567.0 403 67.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.5e-159 566.6 403 67.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.5e-159 566.6 403 67.0
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.5e-159 566.6 403 67.0
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.0e-159 566.2 403 66.0
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.0e-159 566.2 403 66.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.0e-159 566.2 403 67.7
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.6e-159 565.8 397 68.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.4e-159 565.5 403 66.0
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 4.4e-159 565.1 403 67.7
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 4.4e-159 565.1 403 66.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 5.7e-159 564.7 403 66.7
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.7e-159 564.7 403 67.2
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 7.5e-159 564.3 403 66.0
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 7.5e-159 564.3 403 66.0
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 7.5e-159 564.3 403 66.0
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 7.5e-159 564.3 403 67.0
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.8e-159 563.9 403 66.0
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.8e-159 563.9 403 66.0
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 9.8e-159 563.9 403 66.7
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 9.8e-159 563.9 403 67.2
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.3e-158 563.5 403 66.5
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-158 563.1 403 67.2
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.7e-158 563.1 403 67.2
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.2e-158 562.8 403 66.7
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 2.2e-158 562.8 403 66.3
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.8e-158 562.4 403 67.5
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.8e-158 562.4 403 67.0
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.7e-158 562.0 403 66.7
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.7e-158 562.0 403 66.5
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.9e-158 561.6 403 67.0
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 6.3e-158 561.2 403 66.5
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.3e-158 561.2 403 66.7
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 66.3
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 67.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 67.2
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 66.5
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.1e-157 560.5 403 65.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.1e-157 560.5 403 66.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.1e-157 560.5 403 66.7
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-157 560.5 403 66.5
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.8e-157 559.7 403 65.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 1.8e-157 559.7 403 66.0
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.8e-157 559.7 403 66.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.8e-157 559.7 403 66.3
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.8e-157 559.7 402 66.2
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.4e-157 559.3 403 66.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 2.4e-157 559.3 403 65.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.4e-157 559.3 403 67.2
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.4e-157 559.3 402 67.2
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 4.1e-157 558.5 403 65.5
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 4.1e-157 558.5 403 65.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.1e-157 558.5 398 67.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.1e-157 558.5 398 67.6
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.1e-157 558.5 403 66.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 5.4e-157 558.1 403 66.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.4e-157 558.1 403 65.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.4e-157 558.1 403 65.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.0e-157 557.8 403 66.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.0e-157 557.8 403 66.0
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 7.0e-157 557.8 403 66.7
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 7.0e-157 557.8 403 65.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.2e-157 557.4 403 65.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 9.2e-157 557.4 398 67.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-156 557.0 398 67.3
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.2e-156 557.0 403 67.0
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.2e-156 557.0 403 65.5
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.6e-156 556.6 412 66.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.6e-156 556.6 403 67.0
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.6e-156 556.6 417 65.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.6e-156 556.6 403 66.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.6e-156 556.6 403 65.5
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.6e-156 556.6 403 66.0
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.0e-156 556.2 403 66.0
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.0e-156 556.2 398 67.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.5e-156 555.4 403 65.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 3.5e-156 555.4 403 65.5
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.5e-156 555.1 417 64.7
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 4.5e-156 555.1 403 65.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 4.5e-156 555.1 398 67.1
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 4.5e-156 555.1 403 66.7
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 5.9e-156 554.7 403 66.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.7e-156 554.3 403 66.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.0e-155 553.9 418 65.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.0e-155 553.9 403 65.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.0e-155 553.9 403 65.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.3e-155 553.5 403 65.8
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.3e-155 553.5 403 65.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.3e-155 552.7 403 65.0
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.3e-155 552.7 398 65.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.3e-155 552.7 403 64.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.9e-155 552.4 403 65.3
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.9e-155 552.4 403 65.5
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 5.0e-155 551.6 403 66.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.6e-155 551.2 403 65.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 6.6e-155 551.2 403 65.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 6.6e-155 551.2 403 65.0
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.6e-155 550.8 401 65.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 8.6e-155 550.8 403 65.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 8.6e-155 550.8 403 65.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.9e-154 549.7 403 65.5
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.9e-154 549.7 403 66.3
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.5e-154 549.3 398 67.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.3e-154 548.5 403 65.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 7.3e-154 547.7 403 65.5
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 9.5e-154 547.4 439 62.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.1e-153 546.2 403 64.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 2.8e-153 545.8 403 65.5
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.3e-152 542.7 403 64.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 3.0e-152 542.3 400 65.5
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 5.2e-152 541.6 403 63.5
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 8.9e-152 540.8 403 63.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.0e-151 539.7 403 64.5
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 5.7e-151 538.1 430 61.2
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.7e-150 535.4 398 65.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 4.1e-149 531.9 403 63.5
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-147 527.3 420 61.7
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.7e-147 526.6 403 64.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.9e-147 525.4 403 63.5
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 2.5e-146 522.7 442 59.5
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 3.1e-144 515.8 376 66.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.4e-143 511.9 403 62.5
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.0e-140 503.1 358 66.8
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.0e-140 501.5 376 64.1
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 2.3e-139 499.6 403 60.8
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 8.1e-137 491.1 362 65.7
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.5e-130 469.5 403 60.0
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 4.7e-129 465.3 341 66.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.8e-126 455.7 339 66.7
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 6.0e-124 448.4 403 57.6
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 6.2e-121 438.3 398 54.3
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.7e-118 430.3 395 53.9
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 8.7e-115 417.9 290 67.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.3e-107 393.3 404 52.5
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 9.0e-104 381.3 403 49.9
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 9.3e-101 371.3 414 49.8
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.0e-99 367.9 301 64.5
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 7.6e-95 351.7 260 67.3
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 3.0e-83 313.2 229 64.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.9e-83 312.8 277 58.8
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 3.2e-77 293.1 214 64.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 4.7e-76 289.3 214 63.6
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 7.9e-76 288.5 214 62.6
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.0e-59 233.4 167 62.9
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.8e-51 205.3 160 65.0
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.3e-33 148.3 350 28.0
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.9e-33 147.1 115 61.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.6e-31 139.8 353 29.5
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 4.9e-17 93.2 71 59.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.1e-12 77.8 47 70.2
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-11 73.6 319 23.8
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 2.9e-09 67.4 45 62.2
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 7.1e-08 62.8 263 24.0


User provided reference genes

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