Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 0.0e+00 1167.9 587 100.0
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 4.2e-126 456.1 531 46.5
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 2.7e-88 330.5 452 42.5
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.5e-83 312.4 495 40.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 2.9e-79 300.4 449 40.8
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.8e-79 300.1 449 40.8
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 7.2e-78 295.8 461 38.4
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 8.0e-77 292.4 449 39.9
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.0e-76 290.4 461 37.5
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 5.2e-76 289.7 461 38.0
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 6.8e-76 289.3 459 37.9
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 6.8e-76 289.3 461 38.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 2.0e-75 287.7 457 37.4
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 2.6e-75 287.3 469 38.0
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 4.4e-75 286.6 488 38.1
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 7.5e-75 285.8 449 39.0
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.3e-74 285.0 453 37.5
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.2e-74 284.3 454 37.9
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 8.3e-74 282.3 279 51.3
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.1e-73 282.0 266 51.1
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.4e-73 281.6 424 38.9
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.4e-73 281.6 463 36.7
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 2.4e-73 280.8 459 37.7
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 2.4e-73 280.8 267 51.7
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 3.1e-73 280.4 449 37.2
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 4.1e-73 280.0 265 54.0
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 4.1e-73 280.0 445 37.1
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 4.1e-73 280.0 446 39.0
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 4.1e-73 280.0 255 53.7
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.4e-73 279.6 446 38.3
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 7.0e-73 279.3 465 37.0
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 7.0e-73 279.3 467 36.6
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 7.0e-73 279.3 469 36.5
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 7.0e-73 279.3 402 41.5
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 9.2e-73 278.9 471 38.6
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 9.2e-73 278.9 449 37.9
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 9.2e-73 278.9 461 37.1
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.2e-72 278.5 265 52.8
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.2e-72 278.5 449 38.1
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.2e-72 278.5 462 37.2
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.2e-72 278.5 452 38.3
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.2e-72 278.5 250 54.8
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 2.0e-72 277.7 269 52.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 2.7e-72 277.3 462 37.4
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.5e-72 276.6 450 37.8
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 4.5e-72 276.6 267 51.3
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 7.7e-72 275.8 255 52.9
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 7.7e-72 275.8 455 37.4
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.0e-71 275.4 472 37.5
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 1.0e-71 275.4 448 37.9
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.7e-71 274.6 255 52.5
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.3e-71 274.2 461 36.9
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.9e-71 273.9 254 53.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 2.9e-71 273.9 254 55.1
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.8e-71 273.5 444 37.8
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 5.0e-71 273.1 250 53.6
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.0e-71 273.1 456 36.8
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.0e-71 273.1 456 36.8
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 6.6e-71 272.7 445 36.9
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 6.6e-71 272.7 445 36.9
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 6.6e-71 272.7 467 36.8
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 6.6e-71 272.7 255 53.3
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 6.6e-71 272.7 257 52.1
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.1e-70 271.9 254 53.1
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.5e-70 271.6 275 49.8
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 1.9e-70 271.2 253 55.3
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 2.5e-70 270.8 470 35.5
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 2.5e-70 270.8 273 49.5
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.3e-70 270.4 271 49.8
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.6e-70 269.6 267 50.2
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 5.6e-70 269.6 448 36.2
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 5.6e-70 269.6 463 35.4
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 5.6e-70 269.6 461 36.7
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 7.3e-70 269.2 267 50.6
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 9.5e-70 268.9 445 36.2
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 9.5e-70 268.9 458 36.5
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 1.2e-69 268.5 451 37.3
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.2e-69 268.5 450 36.2
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.2e-69 268.5 267 50.9
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 2.8e-69 267.3 248 53.2
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 2.8e-69 267.3 252 54.0
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 3.6e-69 266.9 250 54.4
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.0e-68 265.4 252 52.8
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.0e-68 265.4 471 37.4
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.0e-68 265.4 396 38.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.0e-68 265.4 462 36.6
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.4e-68 265.0 452 39.2
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.3e-68 264.2 464 34.5
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 4.0e-68 263.5 244 58.2
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 4.0e-68 263.5 455 35.6
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 6.8e-68 262.7 428 36.4
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 4.4e-67 260.0 479 36.7
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 9.8e-67 258.8 451 38.6
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 2.2e-66 257.7 253 51.4
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 4.9e-66 256.5 469 36.7
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 7.8e-64 249.2 405 37.5
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 6.6e-63 246.1 485 35.3
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 2.5e-62 244.2 224 54.0
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 3.3e-62 243.8 283 46.6
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 7.3e-62 242.7 439 37.4
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.0e-60 238.8 449 35.6
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.4e-57 226.5 238 53.4
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 3.2e-49 200.7 281 43.1
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 1.2e-48 198.7 215 49.3
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 2.3e-47 194.5 513 31.6
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 9.9e-43 179.1 471 29.9
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.4e-41 174.5 155 57.4
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.4e-41 173.3 155 57.4
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.2e-40 172.2 185 48.1
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.6e-40 171.8 335 34.0
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 3.0e-39 167.5 332 31.6
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 6.9e-36 156.4 324 34.9
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 5.8e-35 153.3 120 59.2
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.7e-34 151.8 333 31.5
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.2e-34 151.4 155 51.0
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 9.3e-33 146.0 135 54.1
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 1.2e-32 145.6 127 57.5
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 2.1e-32 144.8 137 51.8
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 4.8e-29 133.7 134 51.5
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 8.1e-29 132.9 302 32.5
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.8e-28 131.7 135 47.4
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 4.5e-27 127.1 144 45.1
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 7.6e-27 126.3 107 59.8
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.4e-20 105.5 85 55.3
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 4.9e-18 97.1 136 40.4
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 4.2e-17 94.0 101 47.5
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 5.1e-15 87.0 126 43.7
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 4.8e-13 80.5 59 61.0
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 6.2e-13 80.1 61 59.0
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.0e-07 62.8 223 30.0


User provided reference genes

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