Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_22860 Physcomitrium patens HOM05D001504 ORTHO05D001394 1.9e-180 636.3 484 100.0
Mapoly0053s0087 Marchantia polymorpha HOM05D001504 ORTHO05D000111 1.8e-10 71.6 92 39.1
Glyma.03G114500 Glycine max HOM05D001504 ORTHO05D001394 9.1e-10 69.3 87 39.1
Oeu035668.1 Olea europaea HOM05D001504 ORTHO05D001394 9.1e-10 69.3 95 40.0
Psat4g225480 Pisum sativum HOM05D001504 ORTHO05D001394 9.1e-10 69.3 87 43.7
TWI59G0648 Tripterygium wilfordii HOM05D001504 ORTHO05D001394 1.2e-09 68.9 93 39.8
Medtr8g005155 Medicago truncatula HOM05D001504 ORTHO05D001394 2.0e-09 68.2 104 38.5
Ca_14053_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 2.6e-09 67.8 87 42.5
Phvul.010G052250 Phaseolus vulgaris HOM05D001504 ORTHO05D001394 2.6e-09 67.8 87 37.9
TPR.G33114 Trifolium pratense HOM05D001504 ORTHO05D001394 2.6e-09 67.8 87 40.2
Aqoxy3G02795 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 3.5e-09 67.4 85 41.2
AUR62013723 Chenopodium quinoa HOM05D001504 ORTHO05D001394 4.5e-09 67.0 96 36.5
Hma1.2p1_0729F.1_g209480 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 4.5e-09 67.0 101 38.6
Hma1.2p1_1740F.1_g300035 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 4.5e-09 67.0 101 38.6
Lj3g0023415 Lotus japonicus HOM05D001504 ORTHO05D001394 5.9e-09 66.6 87 39.1
Prupe.2G125600 Prunus persica HOM05D001504 ORTHO05D001394 1.0e-08 65.9 87 40.2
RcHm_v2.0_Chr1g0346761 Rosa chinensis HOM05D001504 ORTHO05D001394 1.0e-08 65.9 87 40.2
AUR62023431 Chenopodium quinoa HOM05D001504 ORTHO05D001394 1.3e-08 65.5 96 36.5
MD00G1041100 Malus domestica HOM05D001504 ORTHO05D001394 1.3e-08 65.5 87 39.1
CANSAT35G0026 Cannabis sativa HOM05D001504 ORTHO05D001394 1.7e-08 65.1 93 38.7
Glyma.07G112100 Glycine max HOM05D001504 ORTHO05D001394 1.7e-08 65.1 87 36.8
Hma1.2p1_1740F.1_g300030 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.7e-08 65.1 87 40.2
CANSAT11G0282 Cannabis sativa HOM05D001504 ORTHO05D001394 2.2e-08 64.7 93 38.7
Ciclev10024277m.g Citrus clementina HOM05D001504 ORTHO05D001394 2.2e-08 64.7 93 35.5
FAN06G0357 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.2e-08 64.7 87 40.2
FAN06G4583 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.2e-08 64.7 87 40.2
FAN10G1053 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.2e-08 64.7 87 39.1
FAN10G2602 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.9e-08 64.3 87 39.1
Thecc.01G392100 Theobroma cacao HOM05D001504 ORTHO05D001394 2.9e-08 64.3 93 39.8
VMungo0331G1862 Vigna mungo HOM05D001504 ORTHO05D001394 3.8e-08 63.9 87 36.8
Actinidia12657 Actinidia chinensis HOM05D001504 ORTHO05D001394 5.0e-08 63.5 91 38.5
EL10Ac1g00788 Beta vulgaris HOM05D001504 ORTHO05D001394 5.0e-08 63.5 100 36.0
MSTRG.28157 Avicennia marina HOM05D001504 ORTHO05D001394 6.5e-08 63.2 95 35.8
FvH4_7g09760 Fragaria vesca HOM05D001504 ORTHO05D001394 6.5e-08 63.2 87 40.2
CSS0010311 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 1.5e-07 62.0 93 37.6
CSS0011147 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 1.5e-07 62.0 93 37.6
FAN03G1087 Fragaria x ananassa HOM05D001504 ORTHO05D001394 1.5e-07 62.0 87 39.1
MD09G1283700 Malus domestica HOM05D001504 ORTHO05D001394 1.9e-07 61.6 87 36.8
Nn1g00905 Nelumbo nucifera HOM05D001504 ORTHO05D001394 1.9e-07 61.6 93 35.5
AagrBONN_evm.TU.Sc2ySwM_344.5095 Anthoceros agrestis HOM05D001504 ORTHO05D001394 2.5e-07 61.2 93 34.4
Aqoxy3G02800 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 2.5e-07 61.2 85 36.5
Migut.N01753 Erythranthe guttata HOM05D001504 ORTHO05D001394 2.5e-07 61.2 93 36.6
Migut.O00538 Erythranthe guttata HOM05D001504 ORTHO05D001394 2.5e-07 61.2 93 36.6
Mapoly0001s0533 Marchantia polymorpha HOM05D000161 ORTHO05D000111 2.5e-07 61.2 82 40.2
SEGI_31042 Sequoiadendron giganteum HOM05D001504 ORTHO05D001394 2.5e-07 61.2 93 33.3
Lsat_1_v5_gn_2_27920 Lactuca sativa HOM05D001504 ORTHO05D001394 3.2e-07 60.8 93 38.7
Potri.014G044900 Populus trichocarpa HOM05D001504 ORTHO05D001394 3.2e-07 60.8 99 35.4
arahy.Tifrunner.gnm1.ann1.CKY0R5 Arachis hypogaea HOM05D001504 ORTHO05D001394 4.2e-07 60.5 87 37.9
arahy.Tifrunner.gnm1.ann1.EKL24D Arachis hypogaea HOM05D001504 ORTHO05D001394 4.2e-07 60.5 87 37.9
BcaC07g40559 Brassica carinata HOM05D001504 ORTHO05D001394 4.2e-07 60.5 85 37.6
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 4.2e-07 60.5 85 37.6
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 4.2e-07 60.5 85 37.6
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 4.2e-07 60.5 85 37.6
BraA09t40697Z Brassica rapa HOM05D001504 ORTHO05D001394 4.2e-07 60.5 85 37.6
Atru.chr10.165 Acer truncatum HOM05D001504 ORTHO05D001394 5.5e-07 60.1 87 36.8
Aa31LG1G21790 Aethionema arabicum HOM05D001504 ORTHO05D001394 5.5e-07 60.1 85 37.6
Aqoxy6G00569 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 5.5e-07 60.1 85 35.3
COL.COLO4_12432 Corchorus olitorius HOM05D001504 ORTHO05D001394 5.5e-07 60.1 85 40.0
SalBow5G3598 Salvia bowleyana HOM05D001504 ORTHO05D001394 5.5e-07 60.1 92 35.9
Cpa.g.sc101.32 Carica papaya HOM05D001504 ORTHO05D001394 7.2e-07 59.7 87 36.8
Duzib138G1733 Durio zibethinus HOM05D001504 ORTHO05D001394 7.2e-07 59.7 93 37.6
Actinidia12655 Actinidia chinensis HOM05D001504 ORTHO05D001394 9.4e-07 59.3 93 37.6
SalBow5G2440 Salvia bowleyana HOM05D001504 ORTHO05D001394 9.4e-07 59.3 92 35.9
Cfa011093 Carpinus fangiana HOM05D001504 ORTHO05D001394 1.6e-06 58.5 93 36.6
Mapoly0004s0173 Marchantia polymorpha HOM05D001504 ORTHO05D001394 1.6e-06 58.5 85 40.0
Manes.01G271800 Manihot esculenta HOM05D001504 ORTHO05D001394 2.1e-06 58.2 87 36.8
Haze_02802 Corylus avellana HOM05D001504 ORTHO05D001394 2.7e-06 57.8 93 35.5
Lj7A543T35 Lonicera japonica HOM05D001504 ORTHO05D001394 2.7e-06 57.8 93 35.5
AL5G42650 Arabidopsis lyrata HOM05D001504 ORTHO05D001394 3.6e-06 57.4 85 36.5
DCAR_025073 Daucus carota HOM05D001504 ORTHO05D001394 3.6e-06 57.4 93 32.3
Thhalv10005866m.g Eutrema salsugineum HOM05D001504 ORTHO05D001394 3.6e-06 57.4 77 39.0
CDE04G1753 Ceratophyllum demersum HOM05D003457 ORTHO05D009746 4.7e-06 57.0 76 40.8
Carub.0005s2713 Capsella rubella HOM05D001504 ORTHO05D001394 6.1e-06 56.6 85 34.1
CARHR170720 Cardamine hirsuta HOM05D001504 ORTHO05D001394 6.1e-06 56.6 85 36.5
HanXRQChr10g0288521 Helianthus annuus HOM05D001504 ORTHO05D001394 6.1e-06 56.6 64 46.9
AT3G60400 Arabidopsis thaliana HOM05D001504 ORTHO05D001394 8.0e-06 56.2 85 35.3


User provided reference genes

Program Settings