Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 0.0e+00 1389.4 714 100.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 0.0e+00 1129.8 658 86.8
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.3e-303 1044.6 700 74.4
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 704 75.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 702 73.8
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-301 1037.7 704 74.7
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.2e-300 1036.2 702 74.2
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.7e-300 1035.0 703 73.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 2.7e-300 1035.0 688 75.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 5.9e-300 1033.9 701 74.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 7.7e-300 1033.5 698 74.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-299 1032.3 713 73.1
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 5.0e-299 1030.8 700 73.4
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 5.0e-299 1030.8 698 74.1
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 8.5e-299 1030.0 703 73.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.5e-298 1029.2 701 73.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.2e-298 1028.1 704 74.1
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 699 73.8
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 706 73.7
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-298 1027.3 710 74.2
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 7.2e-298 1026.9 707 73.3
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 9.4e-298 1026.5 702 73.1
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 701 73.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 3.6e-297 1024.6 698 73.9
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 8.0e-297 1023.5 696 75.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.0e-296 1021.5 707 72.6
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 4.0e-296 1021.1 689 73.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 5.2e-296 1020.8 699 73.7
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 8.8e-296 1020.0 699 73.0
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.2e-295 1019.6 691 73.7
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 1.2e-295 1019.6 699 72.8
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 2.0e-295 1018.8 704 73.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 4.4e-295 1017.7 699 72.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 9.8e-295 1016.5 701 72.5
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 9.8e-295 1016.5 655 77.9
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.7e-294 1015.8 688 74.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.7e-294 1015.8 688 73.7
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 1.7e-294 1015.8 703 72.7
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.2e-294 1015.4 698 73.2
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 2.8e-294 1015.0 688 74.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 4.8e-294 1014.2 695 73.2
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 6.3e-294 1013.8 696 73.4
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.3e-294 1013.4 701 72.9
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.4e-293 1012.7 703 72.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 2.4e-293 1011.9 696 73.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 3.1e-293 1011.5 704 72.4
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-293 1011.1 704 73.4
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 7.0e-293 1010.4 689 73.4
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 4.5e-292 1007.7 699 73.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 5.9e-292 1007.3 708 71.9
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 7.7e-292 1006.9 695 73.4
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.7e-292 1006.9 690 73.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.0e-291 1006.5 695 73.4
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.0e-291 1006.5 695 73.2
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 696 73.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 3.8e-291 1004.6 699 73.1
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.8e-291 1004.6 695 73.1
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 3.8e-291 1004.6 695 73.1
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.8e-291 1004.6 695 73.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 5.0e-291 1004.2 702 72.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 5.0e-291 1004.2 703 72.4
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.5e-290 1002.7 699 74.1
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 7.2e-290 1000.3 727 70.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 9.5e-290 1000.0 704 72.4
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.6e-289 999.2 705 71.1
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.1e-289 998.8 705 70.8
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.8e-289 998.4 693 72.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 8.0e-289 996.9 695 71.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.4e-288 996.1 707 71.3
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 5.2e-288 994.2 707 71.3
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.2e-286 988.8 721 71.6
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 5.4e-285 984.2 688 71.2
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.0e-284 982.2 695 72.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.7e-284 981.9 695 70.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.5e-284 981.1 704 72.0
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.3e-283 979.5 703 70.7
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.9e-283 978.4 695 69.9
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 5.0e-283 977.6 703 70.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 8.6e-283 976.9 681 72.8
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 5.6e-282 974.2 703 70.4
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 7.3e-282 973.8 702 70.5
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.2e-281 973.0 703 70.4
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.2e-281 973.0 703 70.4
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 6.1e-281 970.7 702 71.2
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 6.1e-281 970.7 702 71.2
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 8.0e-281 970.3 709 71.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 6.8e-280 967.2 708 71.0
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 6.4e-278 960.7 650 74.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.7e-275 952.6 707 70.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 3.9e-275 951.4 661 72.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.6e-275 950.7 696 70.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 5.6e-274 947.6 673 71.6
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-272 942.2 733 67.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 8.9e-272 940.3 702 69.1
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.5e-271 939.5 611 77.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 4.1e-269 931.4 703 68.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.8e-264 916.0 717 66.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 9.9e-263 910.2 709 66.6
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 9.9e-263 910.2 616 74.7
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.1e-258 896.7 670 69.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.5e-258 895.6 702 67.8
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.5e-255 886.3 695 66.9
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.6e-252 876.3 683 67.1
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.9e-251 871.7 576 77.1
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 3.6e-249 865.1 586 74.2
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.2e-245 852.0 541 78.6
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 7.1e-245 850.9 693 64.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-241 839.0 730 62.1
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.4e-237 825.9 571 73.0
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.3e-234 815.1 698 62.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-231 806.2 537 77.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.3e-219 766.1 693 61.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.4e-215 752.3 666 61.9
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 9.4e-213 744.2 687 56.6
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.2e-209 733.0 519 71.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 5.7e-202 708.4 634 57.4
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.8e-198 695.7 447 78.5
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.2e-181 639.4 610 57.0
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.2e-177 626.7 652 51.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.7e-175 619.8 406 77.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.7e-175 618.2 397 79.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.2e-169 600.1 653 49.0
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.3e-169 598.2 557 60.7
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.2e-164 584.3 663 47.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.7e-151 540.0 517 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-142 510.0 655 41.4
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.1e-142 509.2 643 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.3e-136 488.4 626 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-129 468.0 628 41.7
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-129 467.6 399 64.4
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.6e-119 434.5 307 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.6e-106 390.6 398 52.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.9e-105 387.1 709 36.2
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-104 384.0 247 77.7
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-84 318.5 399 51.4
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.1e-72 278.9 213 63.4
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-65 254.6 228 59.6
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.8e-46 189.9 130 69.2
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-45 187.6 146 62.3
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.4e-43 180.3 171 60.8
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-28 132.1 78 78.2
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 4.1e-27 127.5 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.2e-23 113.6 63 81.0
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.4e-21 107.8 59 83.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.6e-18 99.0 75 60.0
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.1e-14 86.3 54 77.8
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 5.3e-06 57.4 61 47.5


User provided reference genes

Program Settings