Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 1.9e-110 402.5 207 100.0
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 5.1e-18 95.5 104 48.1
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 8.6e-18 94.7 102 48.0
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 3.3e-17 92.8 97 51.5
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 7.3e-17 91.7 99 47.5
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 7.3e-17 91.7 89 50.6
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 1.2e-16 90.9 110 46.4
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 1.6e-16 90.5 89 49.4
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 1.6e-16 90.5 104 45.2
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 1.6e-16 90.5 87 49.4
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 2.1e-16 90.1 110 42.7
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 2.1e-16 90.1 113 46.0
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 2.1e-16 90.1 92 51.1
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 2.8e-16 89.7 110 42.7
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.6e-16 89.4 110 42.7
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 3.6e-16 89.4 89 49.4
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 4.7e-16 89.0 89 50.6
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 4.7e-16 89.0 84 52.4
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 6.2e-16 88.6 89 49.4
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 6.2e-16 88.6 84 50.0
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 6.2e-16 88.6 84 52.4
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 8.1e-16 88.2 95 46.3
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 8.1e-16 88.2 89 49.4
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 8.1e-16 88.2 107 46.7
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 1.1e-15 87.8 89 47.2
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.1e-15 87.8 89 47.2
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 1.1e-15 87.8 89 49.4
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.1e-15 87.8 101 47.5
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 1.1e-15 87.8 116 42.2
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 1.4e-15 87.4 112 43.8
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 1.8e-15 87.0 110 43.6
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 1.8e-15 87.0 89 49.4
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 1.8e-15 87.0 89 48.3
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 1.8e-15 87.0 84 50.0
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 2.4e-15 86.7 103 43.7
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 2.4e-15 86.7 101 47.5
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 2.4e-15 86.7 85 50.6
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 3.1e-15 86.3 88 48.9
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 3.1e-15 86.3 117 42.7
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 3.1e-15 86.3 146 39.0
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 4.0e-15 85.9 86 48.8
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 4.0e-15 85.9 86 48.8
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 4.0e-15 85.9 106 45.3
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 5.2e-15 85.5 89 46.1
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 5.2e-15 85.5 95 45.3
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 6.8e-15 85.1 113 40.7
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 6.8e-15 85.1 99 43.4
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 6.8e-15 85.1 88 47.7
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 8.9e-15 84.7 92 48.9
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 8.9e-15 84.7 89 43.8
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 8.9e-15 84.7 92 48.9
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 1.2e-14 84.3 95 44.2
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 1.2e-14 84.3 95 47.4
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 1.2e-14 84.3 85 51.8
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 1.2e-14 84.3 120 43.3
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 1.5e-14 84.0 101 46.5
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 1.5e-14 84.0 118 43.2
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 2.0e-14 83.6 84 51.2
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 2.6e-14 83.2 89 47.2
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 2.6e-14 83.2 89 47.2
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 2.6e-14 83.2 89 47.2
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 2.6e-14 83.2 118 44.1
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 3.4e-14 82.8 84 50.0
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 4.4e-14 82.4 91 46.2
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 4.4e-14 82.4 86 46.5
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 4.4e-14 82.4 89 46.1
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 4.4e-14 82.4 89 44.9
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 5.8e-14 82.0 89 47.2
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 5.8e-14 82.0 81 48.1
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 5.8e-14 82.0 76 50.0
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 5.8e-14 82.0 121 40.5
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 5.8e-14 82.0 121 38.8
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 7.6e-14 81.6 115 40.9
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 7.6e-14 81.6 95 43.2
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 7.6e-14 81.6 89 47.2
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 7.6e-14 81.6 89 46.1
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 7.6e-14 81.6 109 43.1
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 9.9e-14 81.3 85 51.8
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 9.9e-14 81.3 122 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 1.3e-13 80.9 84 47.6
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 1.3e-13 80.9 84 46.4
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 1.3e-13 80.9 86 48.8
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.7e-13 80.5 89 44.9
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 2.2e-13 80.1 79 49.4
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 2.2e-13 80.1 89 41.6
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 2.9e-13 79.7 95 43.2
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 3.8e-13 79.3 159 37.7
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 3.8e-13 79.3 82 46.3
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 3.8e-13 79.3 110 41.8
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 3.8e-13 79.3 138 39.9
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 3.8e-13 79.3 89 42.7
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 3.8e-13 79.3 134 41.0
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 6.4e-13 78.6 81 45.7
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 1.1e-12 77.8 91 47.3
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 1.9e-12 77.0 160 35.6
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 2.4e-12 76.6 87 41.4
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 3.2e-12 76.3 84 38.1
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 4.2e-12 75.9 89 42.7
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 1.6e-11 73.9 122 36.9
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 1.6e-11 73.9 160 35.6
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 2.7e-11 73.2 105 41.0
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 7.8e-11 71.6 80 45.0
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.1e-09 67.8 85 44.7
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.1e-09 67.8 85 44.7
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.9e-09 67.0 76 44.7
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 5.6e-09 65.5 76 42.1
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.4e-07 60.8 70 47.1
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 2.4e-07 60.1 89 32.6
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 2.4e-07 60.1 57 49.1
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 1.2e-06 57.8 54 48.1
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 1.5e-06 57.4 55 50.9
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 2.6e-06 56.6 61 49.2


User provided reference genes

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