Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 0.0e+00 1201.4 607 100.0
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.6e-197 693.3 611 62.5
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 4.2e-113 412.9 597 39.2
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.0e-111 408.3 595 39.5
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.1e-110 404.8 593 39.8
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 2.5e-110 403.7 597 40.2
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 3.3e-110 403.3 591 38.6
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 5.7e-110 402.5 592 39.7
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 1.7e-109 401.0 598 40.8
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 1.1e-108 398.3 587 40.2
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.1e-108 398.3 600 39.3
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 1.4e-108 397.9 591 38.6
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 3.1e-108 396.7 588 39.6
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 3.1e-108 396.7 596 38.9
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 4.1e-108 396.4 588 38.3
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 5.3e-108 396.0 600 39.0
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.2e-107 394.8 591 38.9
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.5e-107 394.4 600 38.8
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 2.0e-107 394.0 599 38.1
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 2.6e-107 393.7 596 40.6
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 3.4e-107 393.3 590 38.3
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 5.9e-107 392.5 589 39.0
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 5.9e-107 392.5 576 39.4
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 1.0e-106 391.7 589 39.0
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 1.3e-106 391.3 588 38.1
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.7e-106 391.0 611 38.5
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 2.2e-106 390.6 612 40.5
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 5.0e-106 389.4 609 38.8
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.9e-105 387.5 599 37.9
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 2.5e-105 387.1 588 36.9
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 2.5e-105 387.1 588 37.9
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 2.5e-105 387.1 595 39.2
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 3.2e-105 386.7 597 38.9
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 3.2e-105 386.7 593 39.0
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 3.2e-105 386.7 600 38.2
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 5.5e-105 386.0 596 38.4
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 5.5e-105 386.0 621 37.5
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 9.4e-105 385.2 588 37.8
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 2.1e-104 384.0 607 38.9
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 7.9e-104 382.1 611 37.6
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.4e-103 381.3 611 37.2
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 2.3e-103 380.6 616 38.0
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 3.0e-103 380.2 612 38.7
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 3.0e-103 380.2 588 38.6
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 3.9e-103 379.8 594 37.5
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 5.1e-103 379.4 585 37.9
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 5.1e-103 379.4 588 37.4
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 6.7e-103 379.0 577 38.6
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 6.7e-103 379.0 599 37.9
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 8.8e-103 378.6 613 37.5
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.1e-102 378.3 606 36.8
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 4.4e-102 376.3 588 37.4
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 4.4e-102 376.3 586 39.1
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 9.7e-102 375.2 596 38.1
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.3e-101 374.8 595 37.6
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 2.8e-101 373.6 597 37.7
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 4.8e-101 372.9 608 36.7
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 5.3e-100 369.4 593 37.8
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 1.2e-99 368.2 626 37.4
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 2.6e-99 367.1 580 39.7
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.0e-98 365.2 601 36.4
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 8.5e-98 362.1 646 35.9
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 6.1e-96 355.9 646 35.6
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.0e-95 355.1 580 38.1
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 8.8e-95 352.1 603 36.0
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.3e-93 348.2 392 47.2
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 1.7e-93 347.8 655 35.3
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 2.2e-93 347.4 414 46.9
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 8.2e-93 345.5 564 38.5
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.2e-91 341.7 516 39.5
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 2.2e-90 337.4 389 46.3
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 2.5e-89 334.0 557 36.6
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 5.5e-89 332.8 396 45.7
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 1.6e-88 331.3 484 41.1
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 6.1e-88 329.3 614 33.6
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 3.1e-84 317.0 597 35.7
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.7e-83 313.9 359 47.4
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 4.5e-83 313.2 360 47.2
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 4.5e-75 286.6 601 33.1
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 2.9e-74 283.9 329 46.5
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.5e-73 280.8 377 41.4
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.2e-67 261.9 424 36.8
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.0e-58 232.3 418 35.2
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 1.6e-56 224.9 275 44.7
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 2.8e-56 224.2 273 46.2
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 5.2e-55 219.9 264 46.2
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.5e-54 216.1 277 44.8
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.3e-53 215.3 408 33.6
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 3.1e-47 194.1 240 44.2
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.2e-40 169.9 199 44.7
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.1e-39 169.1 475 29.1
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 2.0e-38 164.9 271 38.4
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 1.7e-34 151.8 157 48.4
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 2.1e-32 144.8 288 32.3
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 1.1e-23 115.9 254 32.3
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.2e-22 112.5 188 36.7
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.1e-19 101.7 239 30.5
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.1e-19 101.7 239 30.5
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.3e-18 99.0 125 41.6
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.0e-18 97.8 113 43.4
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 6.9e-15 86.7 135 41.5
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 6.5e-13 80.1 82 45.1
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.1e-12 79.3 238 28.2
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 3.3e-09 67.8 264 23.1
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 5.7e-09 67.0 89 38.2
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 4.8e-08 63.9 94 41.5
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 1.5e-06 58.9 207 27.5


User provided reference genes

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