Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 3.9e-73 278.1 145 100.0
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 2.0e-37 159.5 113 71.7
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 2.9e-28 129.0 113 61.1
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 1.4e-27 126.7 113 63.7
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 6.2e-23 111.3 113 53.1
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 8.2e-23 110.9 113 53.1
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 8.2e-23 110.9 113 57.5
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 1.8e-22 109.8 112 54.5
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 1.8e-22 109.8 113 54.0
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 1.8e-22 109.8 113 54.0
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 1.8e-22 109.8 116 53.4
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 3.1e-22 109.0 114 54.4
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 6.9e-22 107.8 112 52.7
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 1.2e-21 107.1 113 53.1
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 2.6e-21 105.9 113 51.3
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 2.6e-21 105.9 115 51.3
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 2.6e-21 105.9 113 52.2
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 3.4e-21 105.5 114 53.5
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 3.4e-21 105.5 113 52.2
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 3.4e-21 105.5 113 50.4
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 3.4e-21 105.5 113 52.2
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 3.4e-21 105.5 109 51.4
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 4.5e-21 105.1 113 53.1
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 4.5e-21 105.1 113 54.9
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 4.5e-21 105.1 113 54.9
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 4.5e-21 105.1 113 54.9
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 5.8e-21 104.8 113 52.2
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 7.6e-21 104.4 115 51.3
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 7.6e-21 104.4 107 53.3
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 7.6e-21 104.4 113 51.3
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 1.7e-20 103.2 113 54.0
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 1.7e-20 103.2 113 53.1
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.7e-20 103.2 113 54.0
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 2.2e-20 102.8 106 52.8
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 2.9e-20 102.4 107 52.3
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 2.9e-20 102.4 107 52.3
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 6.5e-20 101.3 113 51.3
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 6.5e-20 101.3 111 51.4
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 6.5e-20 101.3 114 52.6
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 6.5e-20 101.3 113 53.1
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 8.4e-20 100.9 113 52.2
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 8.4e-20 100.9 110 51.8
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 8.4e-20 100.9 113 52.2
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 8.4e-20 100.9 113 51.3
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 1.1e-19 100.5 113 51.3
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.1e-19 100.5 113 50.4
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 1.4e-19 100.1 113 52.2
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 1.4e-19 100.1 113 51.3
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 1.9e-19 99.8 114 51.8
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 2.5e-19 99.4 113 50.4
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 2.5e-19 99.4 113 50.4
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 2.5e-19 99.4 110 55.5
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 2.5e-19 99.4 117 52.1
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 4.2e-19 98.6 113 52.2
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 5.5e-19 98.2 113 52.2
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 7.1e-19 97.8 110 50.0
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 9.3e-19 97.4 114 50.9
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 1.2e-18 97.1 113 49.6
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 1.2e-18 97.1 114 50.9
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 2.1e-18 96.3 113 48.7
CBR_g50470 Chara braunii HOM05D006326 ORTHO05D007589 2.7e-18 95.9 134 42.5
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 2.7e-18 95.9 113 51.3
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 3.5e-18 95.5 113 50.4
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 4.6e-18 95.1 113 48.7
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 6.0e-18 94.7 113 49.6
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 6.0e-18 94.7 113 48.7
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 7.9e-18 94.4 115 49.6
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 7.9e-18 94.4 113 49.6
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 7.9e-18 94.4 113 49.6
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 1.0e-17 94.0 115 50.4
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 1.0e-17 94.0 115 50.4
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 3.9e-17 92.0 115 49.6
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 3.9e-17 92.0 113 48.7
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 1.5e-16 90.1 135 41.5
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 1.9e-16 89.7 112 46.4
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 3.3e-16 89.0 110 50.0
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 5.7e-16 88.2 112 45.5
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 4.8e-15 85.1 132 43.2
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 9.0e-14 80.9 110 44.5
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 1.5e-13 80.1 114 45.6
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 2.9e-12 75.9 113 43.4
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 3.8e-12 75.5 76 51.3
Mapoly0021s0060 Marchantia polymorpha HOM05D006326 ORTHO05D007589 6.5e-12 74.7 106 43.4
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 1.1e-11 73.9 113 42.5
Actinidia01833 Actinidia chinensis HOM05D006326 ORTHO05D007589 7.2e-11 71.2 73 53.4
Medtr0722s0010 Medicago truncatula HOM05D006326 ORTHO05D007589 7.2e-11 71.2 75 53.3
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 6.7e-09 64.7 62 53.2
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 8.8e-09 64.3 62 51.6
CSS0022371 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 1.1e-08 63.9 63 54.0
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 9.7e-08 60.8 62 51.6
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 1.7e-07 60.1 62 46.8
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 1.7e-07 60.1 62 46.8
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 4.8e-07 58.5 95 42.1
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 4.8e-07 58.5 62 48.4
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 6.3e-07 58.2 55 52.7
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 6.3e-07 58.2 59 49.2
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 8.2e-07 57.8 61 50.8
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 8.2e-07 57.8 62 50.0
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 1.1e-06 57.4 62 46.8
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 1.4e-06 57.0 59 50.8
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 1.8e-06 56.6 59 49.2
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 1.8e-06 56.6 62 48.4
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 3.1e-06 55.8 62 45.2
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 4.1e-06 55.5 62 46.8
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 4.1e-06 55.5 55 49.1
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 4.1e-06 55.5 62 45.2


User provided reference genes

Program Settings