Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.1e-301 1037.3 554 100.0
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.1e-232 810.1 554 80.0
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.1e-119 432.2 583 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.1e-115 421.4 572 50.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.5e-77 294.7 417 45.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.3e-67 258.8 530 36.4
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 6.6e-65 252.7 541 35.3
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 6.4e-52 209.5 462 34.2
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.6e-45 187.6 453 32.2
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 2.5e-43 181.0 462 33.1
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 3.2e-43 180.6 426 35.7
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 4.2e-43 180.3 455 32.5
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.2e-42 178.7 426 34.0
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 1.6e-42 178.3 426 34.0
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.1e-42 177.9 450 32.9
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 3.5e-42 177.2 485 30.7
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 4.6e-42 176.8 460 32.6
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 6.0e-42 176.4 454 31.9
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.0e-41 175.6 460 32.8
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 1.8e-41 174.9 434 32.3
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.8e-41 174.9 447 32.9
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.8e-41 174.9 420 32.1
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.0e-41 174.1 426 35.4
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 3.0e-41 174.1 420 32.6
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.9e-41 173.7 460 32.8
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 3.9e-41 173.7 421 33.3
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 3.9e-41 173.7 443 32.1
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 5.1e-41 173.3 426 34.5
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 8.7e-41 172.6 456 32.5
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.1e-40 172.2 424 33.7
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.1e-40 172.2 460 32.0
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.5e-40 171.0 438 33.8
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 2.5e-40 171.0 439 31.4
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 3.3e-40 170.6 244 43.0
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 7.4e-40 169.5 434 31.3
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 7.4e-40 169.5 445 31.2
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 7.4e-40 169.5 429 33.6
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 7.4e-40 169.5 424 32.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.3e-39 168.7 438 31.7
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.3e-39 168.7 429 33.1
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.6e-39 168.3 459 32.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 2.1e-39 167.9 437 32.5
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 2.8e-39 167.5 457 30.9
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 3.7e-39 167.2 223 44.4
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 3.7e-39 167.2 425 30.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 4.8e-39 166.8 433 31.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 4.8e-39 166.8 424 33.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 4.8e-39 166.8 451 32.8
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.8e-39 166.8 458 31.4
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 8.2e-39 166.0 459 30.1
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 8.2e-39 166.0 440 31.4
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 8.2e-39 166.0 433 32.1
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 8.2e-39 166.0 244 41.4
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-38 165.6 457 31.3
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-38 165.6 458 31.2
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.1e-38 165.6 429 33.6
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.1e-38 165.6 422 29.4
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.8e-38 164.9 457 31.1
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.8e-38 164.9 507 32.0
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.8e-38 164.9 422 29.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.1e-38 164.1 483 30.8
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 4.1e-38 163.7 457 30.2
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.3e-38 163.3 444 31.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 6.9e-38 162.9 435 30.6
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.0e-38 162.5 434 32.0
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.0e-38 162.5 434 32.0
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 9.0e-38 162.5 244 41.4
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 9.0e-38 162.5 218 43.6
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 9.0e-38 162.5 252 41.3
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.2e-37 162.2 433 31.9
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.2e-37 162.2 490 30.8
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.5e-37 161.8 421 32.5
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.5e-37 161.8 480 30.0
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.6e-37 161.0 432 30.8
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 2.6e-37 161.0 251 41.0
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.4e-37 160.6 421 32.1
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 3.4e-37 160.6 435 33.1
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 3.4e-37 160.6 219 41.6
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 4.5e-37 160.2 433 32.8
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.0e-36 159.1 466 29.6
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 1.0e-36 159.1 195 46.2
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.3e-36 158.7 494 30.6
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.3e-36 158.7 522 29.1
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.7e-36 158.3 432 31.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.7e-36 158.3 429 31.5
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.7e-36 158.3 248 39.9
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 2.9e-36 157.5 196 45.9
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.8e-36 157.1 248 39.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 5.0e-36 156.8 443 28.9
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 5.0e-36 156.8 216 44.0
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 5.0e-36 156.8 435 30.8
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.1e-35 155.6 457 30.9
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.4e-35 155.2 314 34.1
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.5e-35 154.5 520 28.8
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 3.2e-35 154.1 229 39.7
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.2e-35 153.7 285 35.8
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 5.5e-35 153.3 229 39.3
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.5e-35 153.3 213 41.8
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.5e-35 153.3 213 41.8
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 5.5e-35 153.3 444 29.1
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 9.3e-35 152.5 412 30.3
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 9.3e-35 152.5 458 30.1
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.5e-34 150.6 229 39.3
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.5e-34 150.6 451 28.8
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 3.5e-34 150.6 463 29.2
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 6.1e-34 149.8 433 29.3
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 6.7e-33 146.4 503 28.4
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 6.7e-33 146.4 455 28.6
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.7e-33 146.4 420 29.0
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.5e-32 145.2 455 29.9
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.5e-32 145.2 454 30.6
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 2.5e-32 144.4 427 29.5
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 5.7e-32 143.3 456 28.3
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 7.4e-32 142.9 470 26.6
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 9.7e-32 142.5 193 39.9
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 9.7e-32 142.5 430 30.0
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.3e-31 142.1 220 42.7
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.4e-30 138.7 462 30.5
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 3.1e-30 137.5 424 28.8
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 9.7e-24 115.9 429 27.0
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.5e-19 100.1 109 52.3
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 2.9e-12 77.8 137 32.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 6.5e-12 76.6 337 29.7
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.4e-09 68.9 225 28.9
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.3e-09 68.2 83 51.8
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.6e-08 64.7 41 63.4
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 5.3e-06 57.0 240 26.7
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 9.1e-06 56.2 345 21.7


User provided reference genes

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