Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 0.0e+00 1096.6 572 100.0
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.3e-220 767.7 564 72.2
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.4e-174 616.3 572 59.4
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.1e-94 351.7 559 38.1
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.8e-94 350.9 526 38.6
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.4e-88 329.7 540 38.3
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 2.2e-87 327.4 398 43.2
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.6e-82 311.2 537 37.2
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.2e-81 306.2 553 36.0
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.6e-75 286.2 552 32.8
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.2e-74 282.7 534 35.6
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 2.9e-71 273.9 400 38.5
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.6e-58 230.3 413 36.8
Pp3c21_1000 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.3e-57 226.5 540 31.7
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 1.2e-45 188.7 520 26.5
Pp3c21_1020 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.9e-35 154.8 202 42.6
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 2.9e-31 141.0 403 26.3
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 3.2e-30 137.5 512 22.5
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 9.3e-30 136.0 512 22.1
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 3.5e-29 134.0 527 24.9
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 4.6e-29 133.7 516 24.0
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 3.0e-28 131.0 482 22.8
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 5.1e-28 130.2 517 22.2
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 4.3e-27 127.1 523 23.7
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 4.3e-27 127.1 520 24.0
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 1.3e-26 125.6 513 22.8
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.6e-26 125.2 523 22.8
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 2.2e-26 124.8 511 21.9
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 2.8e-26 124.4 518 22.4
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 3.7e-26 124.0 509 22.0
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 6.3e-26 123.2 520 22.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 8.2e-26 122.9 517 22.6
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 2.4e-25 121.3 524 22.5
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 2.0e-24 118.2 524 22.1
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 2.0e-24 118.2 516 23.1
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 2.0e-24 118.2 523 23.5
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 2.6e-24 117.9 518 22.2
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 7.7e-24 116.3 493 21.7
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 1.0e-23 115.9 515 21.6
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.0e-23 115.9 523 23.1
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.3e-23 115.5 520 21.3
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 2.2e-23 114.8 521 21.7
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 3.8e-23 114.0 514 21.2
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.8e-23 114.0 509 21.8
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 6.5e-23 113.2 491 22.6
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 8.5e-23 112.8 517 20.5
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 3.2e-22 110.9 511 21.5
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 3.2e-22 110.9 527 22.0
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 5.5e-22 110.2 519 22.4
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 7.2e-22 109.8 512 22.9
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 9.4e-22 109.4 516 20.9
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 9.4e-22 109.4 516 20.9
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 1.2e-21 109.0 523 22.8
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.2e-21 109.0 522 22.8
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 2.1e-21 108.2 348 24.4
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.0e-20 105.9 507 22.9
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 1.0e-20 105.9 507 22.9
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 1.8e-20 105.1 517 21.1
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 3.0e-20 104.4 516 20.5
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 8.8e-20 102.8 332 24.7
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.5e-19 102.1 549 22.2
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 2.0e-19 101.7 525 21.3
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 2.5e-19 101.3 518 21.0
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 3.3e-19 100.9 315 24.8
Pp3s358_1 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.3e-19 100.9 123 39.8
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 4.3e-19 100.5 530 20.4
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 5.7e-19 100.1 371 24.5
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.4e-19 99.8 247 28.7
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 9.7e-19 99.4 514 21.8
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.3e-18 99.0 518 20.1
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 1.7e-18 98.6 435 23.7
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 1.7e-18 98.6 522 23.0
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 2.2e-18 98.2 410 23.9
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 2.8e-18 97.8 347 26.5
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 8.2e-18 96.3 512 21.5
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 1.1e-17 95.9 512 21.5
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 2.4e-17 94.7 513 20.3
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 3.1e-17 94.4 512 21.7
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 5.3e-17 93.6 350 24.9
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 1.2e-16 92.4 250 26.0
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 1.5e-16 92.0 522 20.7
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-16 92.0 411 23.6
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-16 92.0 411 23.6
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 2.0e-16 91.7 516 22.1
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 2.0e-16 91.7 336 26.2
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 2.9e-15 87.8 509 21.2
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 3.8e-15 87.4 358 24.6
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 1.1e-14 85.9 546 20.3
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 1.8e-12 78.6 533 21.0
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 5.1e-12 77.0 286 22.7
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.8e-10 71.2 169 29.0
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-09 67.8 519 20.8
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 5.3e-09 67.0 279 20.8
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 7.0e-09 66.6 221 27.6
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 9.1e-09 66.2 269 23.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 4.5e-08 63.9 326 20.2
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.4 354 22.0
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-07 62.0 293 25.6
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 8.5e-07 59.7 252 22.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-06 59.3 353 21.5
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 1.5e-06 58.9 240 22.9
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 3.2e-06 57.8 252 23.0
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-06 57.8 372 22.0


User provided reference genes

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