Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.4e-81 305.1 168 100.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.9e-55 219.5 166 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 6.3e-27 124.8 103 56.3
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 3.1e-26 122.5 157 46.5
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 9.1e-26 120.9 99 59.6
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 2.0e-25 119.8 117 51.3
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.5e-25 118.6 136 47.1
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 4.5e-25 118.6 112 54.5
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 5.9e-25 118.2 96 58.3
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 7.7e-25 117.9 96 58.3
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.3e-24 117.1 110 53.6
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.7e-24 116.7 90 61.1
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.7e-24 116.7 119 50.4
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.2e-24 116.3 122 49.2
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.2e-24 116.3 89 61.8
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.9e-24 115.9 134 47.0
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.9e-24 115.9 92 58.7
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 3.8e-24 115.5 125 48.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 5.0e-24 115.2 97 51.5
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 5.0e-24 115.2 90 58.9
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 6.5e-24 114.8 102 56.9
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 6.5e-24 114.8 89 59.6
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 8.5e-24 114.4 90 57.8
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 8.5e-24 114.4 90 57.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.1e-23 114.0 129 46.5
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.5e-23 113.6 121 49.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.5e-23 113.6 97 52.6
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.9e-23 113.2 91 58.2
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.9e-23 113.2 89 58.4
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 2.5e-23 112.8 90 61.1
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.5e-23 112.8 89 58.4
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 2.5e-23 112.8 98 54.1
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 3.2e-23 112.5 92 55.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.2e-23 112.1 121 48.8
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 4.2e-23 112.1 96 52.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 4.2e-23 112.1 89 58.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.5e-23 111.7 107 50.5
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.5e-23 111.7 89 57.3
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 5.5e-23 111.7 89 58.4
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 7.2e-23 111.3 86 59.3
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.2e-23 111.3 113 50.4
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 9.4e-23 110.9 107 51.4
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 9.4e-23 110.9 116 48.3
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 9.4e-23 110.9 111 50.5
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 9.4e-23 110.9 135 45.2
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 9.4e-23 110.9 89 56.2
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 9.4e-23 110.9 90 56.7
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.2e-22 110.5 89 56.2
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.2e-22 110.5 89 56.2
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 1.6e-22 110.2 89 56.2
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.6e-22 110.2 128 44.5
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.6e-22 110.2 136 44.1
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.6e-22 110.2 89 56.2
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.1e-22 109.8 129 47.3
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 2.1e-22 109.8 89 56.2
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 2.1e-22 109.8 89 56.2
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.1e-22 109.8 89 56.2
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.1e-22 109.8 92 55.4
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.7e-22 109.4 90 57.8
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 3.6e-22 109.0 89 55.1
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.6e-22 109.0 89 55.1
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 4.7e-22 108.6 89 55.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 4.7e-22 108.6 89 55.1
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.7e-22 108.6 89 55.1
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.7e-22 108.6 89 55.1
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.7e-22 108.6 97 52.6
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.1e-22 108.2 94 55.3
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 6.1e-22 108.2 90 54.4
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 6.1e-22 108.2 136 42.6
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 6.1e-22 108.2 111 48.6
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 6.1e-22 108.2 89 53.9
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 6.1e-22 108.2 90 53.3
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 6.1e-22 108.2 138 44.2
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 8.0e-22 107.8 90 54.4
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 8.0e-22 107.8 89 55.1
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 8.0e-22 107.8 124 45.2
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 55.6
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 55.6
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 55.6
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 55.6
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 56.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.0e-21 107.5 90 55.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 1.4e-21 107.1 90 55.6
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.4e-21 107.1 90 55.6
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-21 107.1 96 52.1
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.4e-21 107.1 148 43.9
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.4e-21 107.1 109 49.5
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.8e-21 106.7 92 53.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.3e-21 106.3 90 54.4
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.3e-21 106.3 90 54.4
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.3e-21 106.3 90 54.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.3e-21 106.3 89 53.9
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.3e-21 106.3 109 46.8
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.3e-21 106.3 89 55.1
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 3.0e-21 105.9 124 48.4
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 4.0e-21 105.5 89 55.1
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 4.0e-21 105.5 168 40.5
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.0e-21 105.5 85 57.6
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.2e-21 105.1 96 51.0
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.2e-21 105.1 94 51.1
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 6.8e-21 104.8 89 51.7
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 8.8e-21 104.4 93 54.8
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 8.8e-21 104.4 85 56.5
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.8e-21 104.4 85 56.5
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 8.8e-21 104.4 89 53.9
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.2e-20 104.0 143 42.7
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.5e-20 103.6 135 40.7
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.5e-20 103.6 124 42.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.5e-20 103.6 94 50.0
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.0e-20 103.2 136 41.9
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 2.6e-20 102.8 89 56.2
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.4e-20 102.4 90 54.4
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 4.4e-20 102.1 90 53.3
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 4.4e-20 102.1 135 40.7
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 7.5e-20 101.3 135 40.0
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.7e-19 100.1 93 51.6
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 3.7e-19 99.0 136 39.7
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 1.1e-18 97.4 85 51.8
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.8e-18 96.7 114 47.4
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.8e-18 96.7 113 44.2
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.8e-18 96.7 116 45.7
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.0e-17 93.2 69 58.0
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 3.5e-17 92.4 91 50.5
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 7.7e-17 91.3 68 61.8
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.0e-16 90.9 74 56.8
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.3e-16 90.5 90 48.9
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.5e-15 86.3 96 47.9
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 2.5e-15 86.3 77 54.5
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 5.6e-15 85.1 72 54.2
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 9.5e-15 84.3 121 37.2
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.8e-10 70.1 70 44.3
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.0e-08 64.3 57 54.4
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 3.9e-08 62.4 48 62.5
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 5.6e-07 58.5 61 42.6
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 4.7e-06 55.5 62 46.8
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 6.2e-06 55.1 66 47.0


User provided reference genes

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