Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 4.8e-17 90.1 47 100.0
Pp3c2_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 3.2e-13 77.4 44 88.6
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 5.4e-08 60.1 36 80.6
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 7.0e-08 59.7 35 85.7
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.0e-08 59.7 41 73.2
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 1.6e-07 58.5 41 75.6
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.6e-07 58.5 41 73.2
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.6e-07 58.5 41 73.2
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.6e-07 58.5 41 73.2
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.0e-07 58.2 41 70.7
Mapoly0066s0039 Marchantia polymorpha HOM05D004818 ORTHO05D005444 2.0e-07 58.2 46 58.7
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.7e-07 57.8 35 82.9
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.7e-07 57.8 41 70.7
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.7e-07 57.8 41 70.7
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 2.7e-07 57.8 41 73.2
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 3.5e-07 57.4 41 73.2
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 3.5e-07 57.4 41 73.2
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 3.5e-07 57.4 41 73.2
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 70.7
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 73.2
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 4.5e-07 57.0 35 80.0
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 68.3
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 70.7
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 73.2
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 73.2
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 4.5e-07 57.0 41 73.2
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 5.9e-07 56.6 41 73.2
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.9e-07 56.6 35 82.9
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 5.9e-07 56.6 41 70.7
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 7.7e-07 56.2 33 84.8
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 7.7e-07 56.2 41 68.3
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 7.7e-07 56.2 35 80.0
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 7.7e-07 56.2 41 70.7
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 7.7e-07 56.2 41 73.2
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.7e-07 56.2 41 68.3
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.7e-07 56.2 41 68.3
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 1.0e-06 55.8 35 82.9
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.0e-06 55.8 35 82.9
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.0e-06 55.8 35 82.9
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.0e-06 55.8 35 82.9
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.0e-06 55.8 35 82.9
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.3e-06 55.5 41 68.3
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 1.3e-06 55.5 41 70.7
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-06 55.5 41 70.7
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 1.3e-06 55.5 41 70.7
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.7e-06 55.1 41 70.7
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.7e-06 55.1 35 77.1
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.2e-06 54.7 41 70.7
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.2e-06 54.7 41 65.9
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 2.2e-06 54.7 41 68.3
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.2e-06 54.7 34 79.4
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.2e-06 54.7 41 68.3
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.2e-06 54.7 35 80.0
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.2e-06 54.7 33 81.8
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.9e-06 54.3 33 81.8
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-06 54.3 41 70.7
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-06 54.3 41 68.3
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 2.9e-06 54.3 41 70.7
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 3.8e-06 53.9 36 77.8
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 5.0e-06 53.5 41 65.9
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 5.0e-06 53.5 35 80.0
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 5.0e-06 53.5 41 68.3
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-06 53.5 41 68.3
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 6.5e-06 53.1 41 68.3
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 6.5e-06 53.1 41 65.9
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 6.5e-06 53.1 41 68.3
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 8.5e-06 52.8 45 62.2
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 8.5e-06 52.8 35 80.0
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 8.5e-06 52.8 33 81.8


User provided reference genes

Program Settings