Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 2.7e-64 248.4 120 100.0
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 6.9e-44 180.6 120 69.2
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 6.1e-40 167.5 120 65.8
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.1e-39 164.5 120 65.0
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.1e-39 164.5 120 65.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.0e-38 162.5 120 63.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 2.0e-38 162.5 120 63.3
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 5.7e-38 161.0 120 62.5
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-38 161.0 120 63.3
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-38 161.0 120 63.3
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.7e-38 161.0 120 63.3
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.7e-38 161.0 120 63.3
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 9.7e-38 160.2 120 62.5
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.3e-37 159.8 120 62.5
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.7e-37 159.5 120 62.5
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.7e-37 159.5 120 62.5
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.7e-37 159.5 120 63.3
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 2.2e-37 159.1 120 62.5
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 2.2e-37 159.1 119 61.3
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 2.8e-37 158.7 120 62.5
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 2.8e-37 158.7 120 62.5
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 2.8e-37 158.7 120 62.5
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 2.8e-37 158.7 120 62.5
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 2.8e-37 158.7 120 62.5
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.8e-37 158.7 120 62.5
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 3.7e-37 158.3 120 61.7
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 3.7e-37 158.3 120 61.7
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 4.8e-37 157.9 120 62.5
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 4.8e-37 157.9 120 61.7
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 6.3e-37 157.5 120 63.3
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 8.2e-37 157.1 120 60.0
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 1.1e-36 156.8 120 61.7
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.1e-36 156.8 120 61.7
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.1e-36 156.8 120 61.7
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 60.8
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 60.8
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 60.8
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 60.8
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 60.8
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.4e-36 155.6 120 64.2
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.4e-36 155.6 120 60.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 2.4e-36 155.6 120 61.7
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 58.3
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 60.8
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 61.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 61.7
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 60.8
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 4.1e-36 154.8 120 60.0
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 4.1e-36 154.8 120 62.5
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 4.1e-36 154.8 120 60.0
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 4.1e-36 154.8 119 59.7
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 4.1e-36 154.8 119 58.8
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 4.1e-36 154.8 119 58.8
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 5.3e-36 154.5 117 61.5
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 7.0e-36 154.1 120 60.8
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 9.1e-36 153.7 120 59.2
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 9.1e-36 153.7 119 56.3
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 9.1e-36 153.7 120 60.8
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 9.1e-36 153.7 120 60.0
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 9.1e-36 153.7 119 59.7
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 1.2e-35 153.3 120 60.0
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 1.2e-35 153.3 120 59.2
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 1.2e-35 153.3 120 60.8
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.2e-35 153.3 120 60.0
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 1.5e-35 152.9 120 60.0
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 1.5e-35 152.9 120 60.0
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.0e-35 152.5 120 60.0
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 2.0e-35 152.5 120 60.8
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 2.0e-35 152.5 119 58.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 2.0e-35 152.5 119 59.7
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.6e-35 152.1 120 60.0
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 2.6e-35 152.1 120 60.8
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 3.5e-35 151.8 120 55.8
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.5e-35 151.8 120 57.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 3.5e-35 151.8 120 58.3
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 3.5e-35 151.8 120 59.2
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 3.5e-35 151.8 120 61.7
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 4.5e-35 151.4 120 59.2
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.9e-35 151.0 120 57.5
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 7.7e-35 150.6 120 56.7
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 7.7e-35 150.6 120 56.7
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 7.7e-35 150.6 120 58.3
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 57.5
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-34 150.2 119 56.3
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 59.2
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 58.3
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 1.0e-34 150.2 119 57.1
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 59.2
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 59.2
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 59.2
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 56.7
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 58.3
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 58.3
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 57.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.3e-34 149.8 114 61.4
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 60.8
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 1.7e-34 149.4 120 57.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 56.7
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 61.7
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 58.3
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 57.5
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 2.9e-34 148.7 120 57.5
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 2.9e-34 148.7 119 58.0
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 3.8e-34 148.3 120 59.2
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 5.0e-34 147.9 120 58.3
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 5.0e-34 147.9 120 59.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 6.5e-34 147.5 120 57.5
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 8.5e-34 147.1 111 63.1
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 1.4e-33 146.4 120 58.3
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 1.9e-33 146.0 120 57.5
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.9e-33 146.0 120 55.0
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.5e-33 145.6 111 62.2
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.2e-33 144.8 118 57.6
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 4.2e-33 144.8 120 55.0
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 9.4e-33 143.7 120 56.7
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.2e-32 143.3 110 60.0
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.2e-32 143.3 120 55.8
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 2.1e-32 142.5 110 64.5
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.1e-32 142.5 110 62.7
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 4.7e-32 141.4 144 50.7
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 6.7e-31 137.5 110 60.0
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 6.7e-31 137.5 117 55.6
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 2.0e-30 136.0 112 58.0
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.8e-29 132.1 110 58.2
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 9.1e-28 127.1 118 47.5
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 9.1e-28 127.1 105 60.0
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 1.6e-27 126.3 120 50.0
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 4.5e-27 124.8 131 45.0
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 6.5e-26 120.9 120 52.5
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.1e-25 120.2 94 59.6
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.2e-25 118.2 86 64.0
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.2e-25 118.2 85 63.5
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 5.5e-25 117.9 124 52.4
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.2e-24 116.7 92 59.8
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 1.6e-24 116.3 92 56.5
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 1.6e-24 116.3 86 60.5
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 2.7e-24 115.5 110 55.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 2.7e-24 115.5 110 55.5
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.7e-24 115.5 86 62.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.7e-24 115.5 92 57.6
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 6.1e-24 114.4 95 56.8
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.0e-24 114.0 86 61.6
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.0e-23 113.6 84 63.1
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.4e-23 113.2 86 62.8
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.8e-23 112.8 92 55.4
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.3e-23 112.5 110 54.5
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 4.0e-23 111.7 86 62.8
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 2.6e-22 109.0 131 45.0
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 7.5e-22 107.5 86 58.1
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.7e-21 106.3 86 58.1
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 3.7e-21 105.1 135 42.2
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 3.1e-20 102.1 84 58.3
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.9e-19 97.8 70 65.7
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 1.0e-18 97.1 86 53.5
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 8.5e-18 94.0 169 35.5
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 7.2e-17 90.9 93 50.5
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 2.7e-16 89.0 88 48.9
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 3.6e-16 88.6 117 39.3
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 8.0e-16 87.4 62 59.7
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 1.4e-15 86.7 62 58.1
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 3.0e-15 85.5 62 58.1
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 2.0e-14 82.8 86 48.8
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.6e-14 82.4 120 41.7
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 7.5e-14 80.9 62 54.8
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 6.3e-13 77.8 108 38.9
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.3e-10 70.1 67 56.7
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 2.3e-10 69.3 57 50.9
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.6e-10 67.8 67 55.2
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.3e-09 65.5 61 59.0
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.6e-08 62.0 81 44.4


User provided reference genes

Program Settings