Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.7e-73 276.9 130 100.0
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.1e-21 107.1 123 51.2
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.2e-19 99.4 89 56.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.1e-18 94.4 123 46.3
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 9.2e-18 94.0 89 53.9
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.2e-17 93.6 148 41.9
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 2.7e-17 92.4 123 43.9
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.6e-17 91.7 121 45.5
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 6.0e-17 91.3 147 42.2
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 7.8e-17 90.9 123 43.1
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.8e-17 90.9 123 43.1
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.8e-17 90.9 123 43.1
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.8e-17 90.9 123 43.1
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.3e-16 90.1 123 45.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.3e-16 90.1 123 43.9
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.3e-16 89.4 123 43.1
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 2.3e-16 89.4 123 43.1
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.9e-16 88.6 123 43.1
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 3.9e-16 88.6 123 43.1
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 5.1e-16 88.2 123 43.1
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 5.1e-16 88.2 148 39.9
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 5.1e-16 88.2 123 43.1
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.1e-16 88.2 123 43.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 5.1e-16 88.2 148 41.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.6e-16 87.8 123 44.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 8.7e-16 87.4 123 43.9
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 8.7e-16 87.4 123 43.9
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 8.7e-16 87.4 123 43.9
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 8.7e-16 87.4 123 42.3
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 8.7e-16 87.4 123 43.9
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.1e-15 87.0 148 40.5
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.1e-15 87.0 148 40.5
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.1e-15 87.0 148 39.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.1e-15 87.0 148 39.2
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.1e-15 87.0 123 42.3
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.5e-15 86.7 148 39.9
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.9e-15 86.3 123 43.1
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-15 86.3 123 42.3
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.9e-15 86.3 123 43.9
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 42.3
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 42.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 41.5
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 42.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 41.5
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 41.5
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 41.5
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 43.9
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 2.5e-15 85.9 123 42.3
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.3e-15 85.5 123 41.5
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.3e-15 85.5 123 42.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.3e-15 85.1 123 43.1
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 5.6e-15 84.7 123 41.5
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.6e-15 84.7 123 43.1
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.6e-15 84.7 123 42.3
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 5.6e-15 84.7 123 42.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.3e-15 84.3 147 38.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 7.3e-15 84.3 123 41.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 7.3e-15 84.3 148 38.5
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 7.3e-15 84.3 123 41.5
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.3e-15 84.3 123 42.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 9.6e-15 84.0 123 40.7
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 9.6e-15 84.0 123 41.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 9.6e-15 84.0 123 42.3
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 1.3e-14 83.6 123 42.3
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-14 83.6 122 41.8
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.3e-14 83.6 122 41.0
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.6e-14 83.2 123 41.5
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.6e-14 83.2 123 40.7
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.1e-14 82.8 123 41.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.1e-14 82.8 123 41.5
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.8e-14 82.4 123 40.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.8e-14 82.4 123 40.7
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 3.6e-14 82.0 148 37.8
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.8e-14 81.6 123 41.5
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.2e-14 81.3 123 40.7
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 8.1e-14 80.9 123 40.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 8.1e-14 80.9 149 38.3
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.1e-13 80.5 132 40.2
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.1e-13 80.5 123 40.7
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.4e-13 80.1 123 40.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.4e-13 80.1 123 40.7
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.4e-13 80.1 123 39.8
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.4e-13 80.1 123 39.8
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.4e-13 80.1 148 37.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.4e-13 80.1 123 40.7
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.8e-13 79.7 123 39.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-13 79.7 123 40.7
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.8e-13 79.7 123 40.7
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.8e-13 79.7 123 40.7
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.4e-13 79.3 123 39.8
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.4e-13 79.3 123 40.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.4e-13 79.3 123 40.7
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.4e-13 79.3 123 40.7
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 2.4e-13 79.3 123 40.7
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.1e-13 79.0 121 40.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.0
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 39.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.1e-13 79.0 123 40.7
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 4.0e-13 78.6 123 39.8
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.3e-13 78.2 123 39.0
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 5.3e-13 78.2 123 39.8
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.0
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.0
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.0
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.0
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.0
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 9.0e-13 77.4 123 39.8
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-12 77.0 123 38.2
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-12 77.0 123 38.2
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.2e-12 77.0 123 39.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.6e-12 75.9 123 39.0
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 4.4e-12 75.1 123 38.2
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 5.8e-12 74.7 152 34.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 5.8e-12 74.7 123 38.2
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 7.6e-12 74.3 123 39.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.3e-11 73.6 123 38.2
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.7e-11 73.2 122 37.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 3.8e-11 72.0 142 38.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 4.9e-11 71.6 50 68.0
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.4e-10 70.1 143 33.6
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.4e-10 70.1 192 30.2
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.9e-10 69.7 119 37.0
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.2e-10 68.6 130 37.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 7.1e-10 67.8 45 71.1
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-09 65.9 65 47.7
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.1e-07 60.5 95 41.1
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.5e-07 59.3 106 38.7
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.3e-07 58.9 103 37.9
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 5.6e-07 58.2 104 38.5
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 7.3e-07 57.8 103 37.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 9.6e-07 57.4 84 41.7
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.3e-06 57.0 104 37.5
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.6e-06 56.6 103 37.9
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.1e-06 56.2 60 46.7
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 2.8e-06 55.8 104 38.5
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.6e-06 55.5 117 36.8


User provided reference genes

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