Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 0.0e+00 3756.1 1895 100.0
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 4.6e-33 148.7 187 43.3
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 9.6e-31 141.0 181 40.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 8.1e-30 137.9 181 38.7
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 5.3e-29 135.2 181 42.0
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 5.3e-29 135.2 180 39.4
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 6.9e-29 134.8 257 31.5
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 9.0e-29 134.4 180 37.8
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.5e-28 133.7 185 37.8
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.6e-28 132.9 310 30.0
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 7.6e-28 131.3 183 39.9
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.2e-27 129.8 182 35.2
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 3.8e-27 129.0 227 31.7
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-27 129.0 186 35.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.8e-27 129.0 211 34.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 4.9e-27 128.6 183 38.3
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.9e-27 128.6 312 28.8
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 4.9e-27 128.6 188 39.4
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 8.4e-27 127.9 182 34.6
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.4e-27 127.9 227 31.7
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.1e-26 127.5 182 36.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-26 127.1 186 34.9
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.9e-26 126.7 195 34.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.5e-26 126.3 227 31.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.2e-26 125.9 194 37.1
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 4.2e-26 125.6 179 39.1
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.5e-26 125.2 228 31.6
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 9.3e-26 124.4 186 35.5
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.3e-26 124.4 179 40.2
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.2e-25 124.0 183 38.8
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.2e-25 124.0 200 35.5
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.2e-25 124.0 195 33.3
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.6e-25 123.6 177 39.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.6e-25 123.6 321 29.6
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.6e-25 123.6 181 35.4
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.7e-25 122.9 185 37.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.7e-25 122.9 180 40.6
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 2.7e-25 122.9 180 40.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.7e-25 122.9 181 36.5
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 3.5e-25 122.5 185 36.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 4.6e-25 122.1 181 34.8
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 7.9e-25 121.3 200 36.0
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 7.9e-25 121.3 217 35.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 7.9e-25 121.3 180 33.9
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 7.9e-25 121.3 184 37.0
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.0e-24 120.9 180 36.1
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-24 120.2 204 35.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.8e-24 120.2 204 35.3
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.8e-24 120.2 180 39.4
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 2.3e-24 119.8 182 40.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.3e-24 119.8 179 38.0
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 2.3e-24 119.8 181 35.9
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-24 119.8 181 35.9
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 2.3e-24 119.8 185 36.2
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 3.0e-24 119.4 181 36.5
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.0e-24 119.4 180 35.6
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.9e-24 119.0 181 37.0
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 5.1e-24 118.6 181 36.5
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.1e-24 118.6 185 35.7
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 6.7e-24 118.2 185 37.3
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 6.7e-24 118.2 193 33.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 6.7e-24 118.2 180 36.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 8.7e-24 117.9 182 33.0
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.1e-23 117.5 183 36.1
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.5e-23 117.1 410 25.9
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.5e-23 117.1 188 34.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.5e-23 117.1 180 35.6
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 2.5e-23 116.3 215 34.4
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.5e-23 116.3 183 36.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-23 116.3 191 33.5
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.5e-23 116.3 182 37.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-23 115.5 215 34.0
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 4.3e-23 115.5 199 34.7
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 4.3e-23 115.5 180 36.1
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 5.7e-23 115.2 181 35.9
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 5.7e-23 115.2 183 37.7
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.7e-23 115.2 204 35.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 7.4e-23 114.8 369 26.3
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 7.4e-23 114.8 185 34.6
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 9.6e-23 114.4 194 35.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 9.6e-23 114.4 194 34.0
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-22 113.6 199 34.7
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-22 113.6 199 34.7
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 2.1e-22 113.2 207 34.8
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.8e-22 112.8 194 35.1
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 2.8e-22 112.8 179 38.0
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 3.7e-22 112.5 181 33.1
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 6.2e-22 111.7 220 33.2
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 6.2e-22 111.7 190 34.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 6.2e-22 111.7 200 35.5
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 8.2e-22 111.3 181 35.4
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.1e-21 110.9 182 35.7
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.4e-21 110.5 235 31.5
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 2.4e-21 109.8 384 25.5
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.4e-21 109.8 179 32.4
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 3.1e-21 109.4 180 35.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.1e-21 109.0 202 34.2
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.1e-21 109.0 174 38.5
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 5.3e-21 108.6 182 35.2
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 6.9e-21 108.2 189 33.9
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 9.0e-21 107.8 181 34.8
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-20 107.5 181 34.8
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-20 107.5 181 34.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-20 107.5 181 34.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-20 106.7 214 30.8
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.0e-20 106.7 186 33.9
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.5e-20 105.5 181 34.8
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 7.6e-20 104.8 182 36.8
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 7.6e-20 104.8 191 33.0
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 1.0e-19 104.4 181 34.3
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.0e-19 104.4 181 33.1
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.0e-19 104.4 188 31.9
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.7e-19 103.6 182 35.2
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.2e-19 103.2 215 31.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.8e-19 102.4 210 28.1
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 6.5e-19 101.7 187 35.3
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 6.5e-19 101.7 238 28.2
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.1e-18 100.9 254 26.8
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.5e-18 99.8 207 30.0
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.5e-18 98.6 187 34.2
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 6.1e-17 95.1 180 29.4
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 2.3e-16 93.2 185 35.1
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-15 89.7 181 30.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.5e-15 89.7 189 30.2
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 6.3e-14 85.1 265 24.2
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 9.0e-13 81.3 182 25.8
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.2e-12 80.9 146 31.5
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.0e-11 77.8 172 28.5
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.3e-11 77.4 255 28.6
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.9e-11 76.3 128 34.4
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 8.5e-11 74.7 167 31.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.4e-10 73.9 112 36.6
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.4e-10 73.9 147 29.9
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-10 73.6 175 29.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-10 73.6 190 28.4
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-10 73.6 190 28.4
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 3.2e-10 72.8 135 33.3
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 4.2e-10 72.4 181 29.3
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.2e-09 70.9 184 31.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.1e-09 70.1 200 26.0
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 3.6e-09 69.3 202 27.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.0e-08 67.8 139 30.9
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 3.0e-08 66.2 67 40.3
SEGI_09106 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 3.0e-08 66.2 206 28.6
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 8.8e-08 64.7 98 37.8
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 8.8e-08 64.7 184 27.7
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-07 64.3 138 31.2
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-07 63.9 67 43.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.5e-07 63.9 72 41.7
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.0e-07 63.5 78 37.2
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 2.5e-07 63.2 172 29.7
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 3.3e-07 62.8 200 27.0
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 7.4e-07 61.6 103 35.9
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 7.4e-07 61.6 204 23.5
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 3.7e-06 59.3 200 24.5
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 4.8e-06 58.9 67 37.3
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 6.3e-06 58.5 219 25.6


User provided reference genes

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