Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_16840 Physcomitrium patens HOM05D005559 ORTHO05D314588 1.8e-117 426.0 226 100.0
MBI01_g28397_MAGBIO Magnolia biondii HOM05D005559 ORTHO05D006957 3.0e-16 89.7 97 47.4
ATR0605G082 Amborella trichopoda HOM05D005559 ORTHO05D006957 9.8e-15 84.7 96 44.8
Carub.0004s1526 Capsella rubella HOM05D005559 ORTHO05D006957 2.8e-14 83.2 96 46.9
SalBow6G6240 Salvia bowleyana HOM05D005559 ORTHO05D006957 4.8e-14 82.4 94 47.9
Ah.03g148440 Amaranthus hybridus HOM05D005559 ORTHO05D006957 6.3e-14 82.0 94 44.7
AT2G33630 Arabidopsis thaliana HOM05D005559 ORTHO05D006957 1.4e-13 80.9 96 46.9
Rhsim06G0003400 Rhododendron simsii HOM05D005559 ORTHO05D006957 1.8e-13 80.5 98 45.9
BcaB01g03926 Brassica carinata HOM05D005559 ORTHO05D006957 4.1e-13 79.3 99 43.4
BcaC01g05830 Brassica carinata HOM05D005559 ORTHO05D006957 4.1e-13 79.3 99 43.4
BolC3t14582H Brassica oleracea HOM05D005559 ORTHO05D006957 4.1e-13 79.3 99 43.4
CANSAT25G2267 Cannabis sativa HOM05D005559 ORTHO05D006957 5.4e-13 79.0 96 42.7
Zm00001eb252680 Zea mays HOM05D005559 ORTHO05D006957 5.4e-13 79.0 91 48.4
Aa31LG9G13560 Aethionema arabicum HOM05D005559 ORTHO05D006957 7.0e-13 78.6 94 45.7
C03p21990 Brassica napus HOM05D005559 ORTHO05D006957 7.0e-13 78.6 99 43.4
CARHR127640 Cardamine hirsuta HOM05D005559 ORTHO05D006957 7.0e-13 78.6 91 48.4
Hund01836 Selenicereus undatus HOM05D005559 ORTHO05D006957 9.1e-13 78.2 94 44.7
Cpa.g.sc26.16 Carica papaya HOM05D005559 ORTHO05D006957 1.2e-12 77.8 94 46.8
Os02g0715200 Oryza sativa ssp. japonica HOM05D005559 ORTHO05D006957 1.2e-12 77.8 91 47.3
Ah.01g024690 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.6e-12 77.4 94 41.5
MD06G1004300 Malus domestica HOM05D005559 ORTHO05D006957 1.6e-12 77.4 97 42.3
A03p18820 Brassica napus HOM05D005559 ORTHO05D006957 2.0e-12 77.0 94 44.7
BraA03t11142Z Brassica rapa HOM05D005559 ORTHO05D006957 2.0e-12 77.0 94 43.6
CDE05G2847 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 2.0e-12 77.0 94 44.7
Migut.N02985 Erythranthe guttata HOM05D005559 ORTHO05D006957 2.0e-12 77.0 94 43.6
CDE10G0210 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 2.7e-12 76.6 91 48.4
Sp4g15980 Schrenkiella parvula HOM05D005559 ORTHO05D006957 2.7e-12 76.6 94 43.6
vmacro21769 Vaccinium macrocarpon HOM05D005559 ORTHO05D006957 2.7e-12 76.6 98 42.9
ClCG11G019030 Citrullus lanatus HOM05D005559 ORTHO05D006957 4.5e-12 75.9 94 41.5
CsaV3_4G037630 Cucumis sativus L. HOM05D005559 ORTHO05D006957 4.5e-12 75.9 94 42.6
TAR381G1403 Trochodendron aralioides HOM05D005559 ORTHO05D006957 5.9e-12 75.5 94 42.6
Thhalv10016587m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 7.7e-12 75.1 96 42.7
Cfa014135 Carpinus fangiana HOM05D005559 ORTHO05D006957 1.0e-11 74.7 96 39.6
Eucgr.F01812 Eucalyptus grandis HOM05D005559 ORTHO05D006957 1.0e-11 74.7 94 46.8
THA.LOC104806872 Tarenaya hassleriana HOM05D005559 ORTHO05D006957 1.0e-11 74.7 94 44.7
EL10Ac1g01873 Beta vulgaris HOM05D005559 ORTHO05D006957 1.3e-11 74.3 98 38.8
Pp3c12_23240 Physcomitrium patens HOM05D005559 ORTHO05D006957 1.3e-11 74.3 102 38.2
CiPaw.07G133700 Carya illinoinensis HOM05D005559 ORTHO05D006957 1.7e-11 73.9 94 42.6
Haze_22861 Corylus avellana HOM05D005559 ORTHO05D006957 1.7e-11 73.9 96 39.6
Lsat_1_v5_gn_2_3240 Lactuca sativa HOM05D005559 ORTHO05D006957 1.7e-11 73.9 96 42.7
Prupe.5G005700 Prunus persica HOM05D005559 ORTHO05D006957 1.7e-11 73.9 98 38.8
Sed0000545 Sechium edule HOM05D005559 ORTHO05D006957 1.7e-11 73.9 94 41.5
Atru.chr13.62 Acer truncatum HOM05D005559 ORTHO05D006957 2.2e-11 73.6 94 42.6
CSS0038076 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 2.9e-11 73.2 94 43.6
Lj4A5T46 Lonicera japonica HOM05D005559 ORTHO05D006957 2.9e-11 73.2 91 42.9
MSTRG.24514 Avicennia marina HOM05D005559 ORTHO05D006957 3.8e-11 72.8 94 41.5
RcHm_v2.0_Chr7g0216661 Rosa chinensis HOM05D005559 ORTHO05D006957 3.8e-11 72.8 96 41.7
Ciclev10001002m.g Citrus clementina HOM05D005559 ORTHO05D006957 5.0e-11 72.4 94 41.5
FAN08G1655 Fragaria x ananassa HOM05D005559 ORTHO05D006957 5.0e-11 72.4 94 41.5
Sp5g31610 Schrenkiella parvula HOM05D005559 ORTHO05D006957 5.0e-11 72.4 99 41.4
Oeu035757.2 Olea europaea HOM05D005559 ORTHO05D006957 6.5e-11 72.0 94 42.6
CDE10G0878 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 8.5e-11 71.6 153 35.9
Cc10_g00280 Coffea canephora HOM05D005559 ORTHO05D006957 8.5e-11 71.6 96 42.7
Dinv13752 Davidia involucrata HOM05D005559 ORTHO05D006957 8.5e-11 71.6 94 41.5
FvH4_5g26130 Fragaria vesca HOM05D005559 ORTHO05D006957 8.5e-11 71.6 96 39.6
FAN18G3125 Fragaria x ananassa HOM05D005559 ORTHO05D006957 8.5e-11 71.6 96 39.6
Actinidia17075 Actinidia chinensis HOM05D005559 ORTHO05D006957 1.1e-10 71.2 94 43.6
arahy.Tifrunner.gnm1.ann1.MFDH98 Arachis hypogaea HOM05D005559 ORTHO05D006957 1.1e-10 71.2 94 41.5
PSO675G8730 Papaver somniferum HOM05D005559 ORTHO05D006957 1.1e-10 71.2 98 41.8
SGA_v2.0_scaffold227G43160 Striga asiatica HOM05D005559 ORTHO05D006957 1.1e-10 71.2 98 37.8
Carub.0002s2336 Capsella rubella HOM05D005559 ORTHO05D006957 1.5e-10 70.9 99 40.4
FAN13G1149 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.5e-10 70.9 94 41.5
PSO541G1320 Papaver somniferum HOM05D005559 ORTHO05D006957 1.5e-10 70.9 98 41.8
Thecc.08G100000 Theobroma cacao HOM05D005559 ORTHO05D006957 1.5e-10 70.9 96 42.7
unitig_22.g5730 Utricularia gibba HOM05D005559 ORTHO05D006957 1.5e-10 70.9 101 39.6
AL2G36580 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 1.9e-10 70.5 99 40.4
ECA238G3676 Erigeron canadensis HOM05D005559 ORTHO05D006957 1.9e-10 70.5 95 41.1
QL02p015726 Quercus lobata HOM05D005559 ORTHO05D006957 1.9e-10 70.5 93 43.0
PGSC0003DMG400009923 Solanum tuberosum HOM05D005559 ORTHO05D006957 1.9e-10 70.5 96 39.6
AL4G29300 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 2.5e-10 70.1 94 44.7
Hma1.2p1_0699F.1_g205720 Hydrangea macrophylla HOM05D005559 ORTHO05D006957 2.5e-10 70.1 94 40.4
Gohir.A01G102000 Gossypium hirsutum HOM05D005559 ORTHO05D006957 3.2e-10 69.7 100 40.0
Nitab4.5_0001756g0040 Nicotiana tabacum HOM05D005559 ORTHO05D006957 3.2e-10 69.7 96 40.6
Potri.002G005100 Populus trichocarpa HOM05D005559 ORTHO05D006957 3.2e-10 69.7 94 39.4
Glyma.14G223900 Glycine max HOM05D005559 ORTHO05D006957 4.2e-10 69.3 94 41.5
Peaxi162Scf00680g00636 Petunia axillaris HOM05D005559 ORTHO05D006957 4.2e-10 69.3 94 43.6
TPR.G26383 Trifolium pratense HOM05D005559 ORTHO05D006957 4.2e-10 69.3 94 40.4
GSVIVG01013425001 Vitis vinifera HOM05D005559 ORTHO05D006957 4.2e-10 69.3 90 41.1
Medtr1g026540 Medicago truncatula HOM05D005559 ORTHO05D006957 5.5e-10 68.9 96 39.6
Solyc04g082750.3 Solanum lycopersicum HOM05D005559 ORTHO05D006957 5.5e-10 68.9 96 39.6
Sopen04g036390 Solanum pennellii HOM05D005559 ORTHO05D006957 5.5e-10 68.9 96 39.6
Glyma.17G262100 Glycine max HOM05D005559 ORTHO05D006957 7.2e-10 68.6 94 41.5
Lalb_Chr01g0008311 Lupinus albus HOM05D005559 ORTHO05D006957 7.2e-10 68.6 96 40.6
Manes.18G002100 Manihot esculenta HOM05D005559 ORTHO05D006957 7.2e-10 68.6 96 38.5
TWI56G0785 Tripterygium wilfordii HOM05D005559 ORTHO05D006957 7.2e-10 68.6 94 40.4
Aqoxy6G02983 Aquilegia oxysepala HOM05D005559 ORTHO05D006957 9.4e-10 68.2 96 39.6
Sabra02G0003500 Salix brachista HOM05D005559 ORTHO05D006957 9.4e-10 68.2 94 39.4
SMO147G0007 Selaginella moellendorffii HOM05D005559 ORTHO05D006957 9.4e-10 68.2 96 36.5
Sc26g0004750 Simmondsia chinensis HOM05D005559 ORTHO05D006957 9.4e-10 68.2 94 40.4
Gorai.002G112800 Gossypium raimondii HOM05D005559 ORTHO05D006957 1.2e-09 67.8 96 40.6
Phvul.001G000700 Phaseolus vulgaris HOM05D005559 ORTHO05D006957 1.2e-09 67.8 94 42.6
Psat0s1355g0040 Pisum sativum HOM05D005559 ORTHO05D006957 1.2e-09 67.8 96 39.6
CAN.G1330.11 Capsicum annuum HOM05D005559 ORTHO05D006957 1.6e-09 67.4 96 40.6
COL.COLO4_12311 Corchorus olitorius HOM05D005559 ORTHO05D006957 1.6e-09 67.4 95 38.9
Duzib116G0447 Durio zibethinus HOM05D005559 ORTHO05D006957 2.1e-09 67.0 96 40.6
HanXRQChr06g0185311 Helianthus annuus HOM05D005559 ORTHO05D006957 2.1e-09 67.0 98 40.8
VMungo0647G1813 Vigna mungo HOM05D005559 ORTHO05D006957 2.7e-09 66.6 94 41.5
Thhalv10018454m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 3.6e-09 66.2 99 41.4
PSO675G8223 Papaver somniferum HOM05D005559 ORTHO05D006957 6.1e-09 65.5 95 41.1
Lj5g0020249 Lotus japonicus HOM05D005559 ORTHO05D006957 8.0e-09 65.1 94 41.5
Potri.002G005201 Populus trichocarpa HOM05D005559 ORTHO05D006957 8.0e-09 65.1 91 40.7
Gohir.D01G087100 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.0e-08 64.7 96 39.6
PSO541G1621 Papaver somniferum HOM05D005559 ORTHO05D006957 2.3e-08 63.5 93 41.9
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 3.0e-08 63.2 87 36.8
FAN18G2825 Fragaria x ananassa HOM05D005559 ORTHO05D006957 3.0e-08 63.2 87 37.9
Pp3c2_23200 Physcomitrium patens HOM05D001654 ORTHO05D008085 3.0e-08 63.2 85 54.1
Sabra02G0003600 Salix brachista HOM05D005559 ORTHO05D006957 3.0e-08 63.2 91 38.5
Ah.11g041970 Amaranthus hybridus HOM05D005559 ORTHO05D006957 5.2e-08 62.4 101 34.7
AUR62035169 Chenopodium quinoa HOM05D005559 ORTHO05D006957 6.8e-08 62.0 97 36.1
Aa31LG4G6530 Aethionema arabicum HOM05D005559 ORTHO05D006957 8.8e-08 61.6 100 35.0
BcaC08g47244 Brassica carinata HOM05D005559 ORTHO05D006957 8.8e-08 61.6 90 38.9
BcaC08g47151 Brassica carinata HOM05D005559 ORTHO05D006957 1.5e-07 60.8 90 40.0
A07p42110 Brassica napus HOM05D005559 ORTHO05D006957 1.5e-07 60.8 90 38.9
BraA07t31740Z Brassica rapa HOM05D005559 ORTHO05D006957 1.5e-07 60.8 90 38.9
DCAR_023024 Daucus carota HOM05D005559 ORTHO05D006957 1.5e-07 60.8 96 37.5
CSS0028031 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 2.0e-07 60.5 94 39.4
Peaxi162Scf00269g00414 Petunia axillaris HOM05D005559 ORTHO05D006957 2.6e-07 60.1 96 38.5
C06p50680 Brassica napus HOM05D005559 ORTHO05D006957 3.4e-07 59.7 90 38.9
PGR031G1403 Punica granatum HOM05D005559 ORTHO05D006957 1.3e-06 57.8 52 51.9


User provided reference genes

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