Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_16780 Physcomitrium patens HOM05D003634 ORTHO05D004146 9.2e-145 516.9 269 100.0
Pp3c2_23590 Physcomitrium patens HOM05D003634 ORTHO05D004146 3.2e-121 438.7 269 83.3
Pp3c11_12080 Physcomitrium patens HOM05D003634 ORTHO05D004146 2.0e-115 419.5 271 80.1
Pp3c7_12850 Physcomitrium patens HOM05D003634 ORTHO05D004146 2.0e-115 419.5 270 80.0
Mapoly0058s0006 Marchantia polymorpha HOM05D003634 ORTHO05D004146 5.5e-81 305.1 271 60.5
Mapoly0094s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 4.6e-80 302.0 270 59.6
AT1G06680 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 1.0e-79 300.8 217 67.3
AL1G16690 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 2.3e-79 299.7 217 66.8
Carub.0001s0601 Capsella rubella HOM05D003634 ORTHO05D004146 6.7e-79 298.1 217 65.9
CARHR006360 Cardamine hirsuta HOM05D003634 ORTHO05D004146 8.7e-79 297.7 217 65.9
Sopen07g023420 Solanum pennellii HOM05D003634 ORTHO05D004146 1.9e-78 296.6 217 65.9
BolC5t29259H Brassica oleracea HOM05D003634 ORTHO05D004146 3.3e-78 295.8 217 65.4
Carub.0004s1200 Capsella rubella HOM05D003634 ORTHO05D004146 4.3e-78 295.4 254 60.6
C05p04870 Brassica napus HOM05D003634 ORTHO05D004146 5.7e-78 295.0 217 65.4
A08p35900 Brassica napus HOM05D003634 ORTHO05D004146 9.6e-78 294.3 253 59.7
BraA08t35497Z Brassica rapa HOM05D003634 ORTHO05D004146 9.6e-78 294.3 253 59.7
CARHR124260 Cardamine hirsuta HOM05D003634 ORTHO05D004146 1.3e-77 293.9 234 63.2
CANSAT64G2967 Cannabis sativa HOM05D003634 ORTHO05D004146 1.6e-77 293.5 230 62.6
Peaxi162Scf00359g01218 Petunia axillaris HOM05D003634 ORTHO05D004146 1.6e-77 293.5 232 62.1
Solyc07g044860.3 Solanum lycopersicum HOM05D003634 ORTHO05D004146 1.6e-77 293.5 236 61.9
Ah.02g120770 Amaranthus hybridus HOM05D003634 ORTHO05D004146 2.1e-77 293.1 218 66.1
AL4G25720 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 2.1e-77 293.1 249 60.6
BcaB02g10342 Brassica carinata HOM05D003634 ORTHO05D004146 2.1e-77 293.1 225 64.4
A10p05270 Brassica napus HOM05D003634 ORTHO05D004146 2.1e-77 293.1 249 59.8
BraA10t42792Z Brassica rapa HOM05D003634 ORTHO05D004146 2.1e-77 293.1 249 59.8
Gohir.D04G034900 Gossypium hirsutum HOM05D003634 ORTHO05D004146 2.8e-77 292.7 217 66.8
Gorai.012G039400 Gossypium raimondii HOM05D003634 ORTHO05D004146 2.8e-77 292.7 217 66.8
Gohir.A05G380700 Gossypium hirsutum HOM05D003634 ORTHO05D004146 3.7e-77 292.4 217 66.4
Aa31LG1G7720 Aethionema arabicum HOM05D003634 ORTHO05D004146 4.8e-77 292.0 217 65.4
FAN14G5409 Fragaria x ananassa HOM05D003634 ORTHO05D004146 4.8e-77 292.0 222 64.4
FvH4_6g38900 Fragaria vesca HOM05D003634 ORTHO05D004146 6.3e-77 291.6 222 64.4
FAN09G2615 Fragaria x ananassa HOM05D003634 ORTHO05D004146 8.2e-77 291.2 222 64.9
SMO276G0004 Selaginella moellendorffii HOM05D003634 ORTHO05D004146 8.2e-77 291.2 217 64.1
TWI23G0402 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 8.2e-77 291.2 217 66.8
Ah.03g147560 Amaranthus hybridus HOM05D003634 ORTHO05D004146 1.1e-76 290.8 213 66.2
A09p66850 Brassica napus HOM05D003634 ORTHO05D004146 1.1e-76 290.8 217 64.5
BolC8t52634H Brassica oleracea HOM05D003634 ORTHO05D004146 1.1e-76 290.8 217 64.5
FAN05G3719 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.1e-76 290.8 222 64.4
C08p02670 Brassica napus HOM05D003634 ORTHO05D004146 1.4e-76 290.4 253 58.9
BolC8t47063H Brassica oleracea HOM05D003634 ORTHO05D004146 1.4e-76 290.4 253 58.9
ClCG07G010800 Citrullus lanatus HOM05D003634 ORTHO05D004146 1.8e-76 290.0 212 66.0
ECA234G0286 Erigeron canadensis HOM05D003634 ORTHO05D004146 1.8e-76 290.0 221 63.8
C08p51070 Brassica napus HOM05D003634 ORTHO05D004146 2.4e-76 289.7 217 64.5
CiPaw.04G137000 Carya illinoinensis HOM05D003634 ORTHO05D004146 2.4e-76 289.7 218 63.3
Thhalv10008504m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 2.4e-76 289.7 217 65.0
BcaC02g11165 Brassica carinata HOM05D003634 ORTHO05D004146 3.1e-76 289.3 230 63.0
BcaC07g42054 Brassica carinata HOM05D003634 ORTHO05D004146 3.1e-76 289.3 217 64.1
C04p19800 Brassica napus HOM05D003634 ORTHO05D004146 3.1e-76 289.3 230 63.0
BolC4t23513H Brassica oleracea HOM05D003634 ORTHO05D004146 3.1e-76 289.3 230 63.0
BraA09t42022Z Brassica rapa HOM05D003634 ORTHO05D004146 3.1e-76 289.3 217 64.1
BraA05t20408Z Brassica rapa HOM05D003634 ORTHO05D004146 4.1e-76 288.9 225 63.1
Thhalv10017096m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 4.1e-76 288.9 225 63.6
BcaNung05935 Brassica carinata HOM05D003634 ORTHO05D004146 5.3e-76 288.5 254 57.9
DCAR_023039 Daucus carota HOM05D003634 ORTHO05D004146 5.3e-76 288.5 217 65.9
SEGI_24342 Sequoiadendron giganteum HOM05D003634 ORTHO05D004146 5.3e-76 288.5 212 65.6
A05p14800 Brassica napus HOM05D003634 ORTHO05D004146 9.0e-76 287.7 225 62.7
arahy.Tifrunner.gnm1.ann1.30A6BG Arachis hypogaea HOM05D003634 ORTHO05D004146 1.2e-75 287.3 217 64.5
EL10Ac6g15357 Beta vulgaris HOM05D003634 ORTHO05D004146 1.2e-75 287.3 213 65.3
Pp3c11_11560 Physcomitrium patens HOM05D003634 ORTHO05D004146 1.2e-75 287.3 183 73.8
FAN02G0185 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.5e-75 287.0 222 64.4
Lj1A651T46 Lonicera japonica HOM05D003634 ORTHO05D004146 1.5e-75 287.0 249 59.8
Manes.02G089900 Manihot esculenta HOM05D003634 ORTHO05D004146 1.5e-75 287.0 234 61.1
Manes.01G131300 Manihot esculenta HOM05D003634 ORTHO05D004146 2.0e-75 286.6 229 62.4
Sp1g05410 Schrenkiella parvula HOM05D003634 ORTHO05D004146 2.0e-75 286.6 224 62.5
CsaV3_4G007520 Cucumis sativus L. HOM05D003634 ORTHO05D004146 2.6e-75 286.2 212 66.0
DCAR_009820 Daucus carota HOM05D003634 ORTHO05D004146 2.6e-75 286.2 232 64.7
HanXRQChr05g0129681 Helianthus annuus HOM05D003634 ORTHO05D004146 2.6e-75 286.2 220 63.2
Phvul.008G196500 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 2.6e-75 286.2 217 63.1
RcHm_v2.0_Chr2g0152481 Rosa chinensis HOM05D003634 ORTHO05D004146 2.6e-75 286.2 212 67.0
Migut.H01272 Erythranthe guttata HOM05D003634 ORTHO05D004146 3.4e-75 285.8 212 64.6
Glyma.08G304200 Glycine max HOM05D003634 ORTHO05D004146 3.4e-75 285.8 217 63.6
COL.COLO4_29888 Corchorus olitorius HOM05D003634 ORTHO05D004146 4.5e-75 285.4 222 62.6
MD09G1146300 Malus domestica HOM05D003634 ORTHO05D004146 4.5e-75 285.4 225 63.6
Rhsim12G0013500 Rhododendron simsii HOM05D003634 ORTHO05D004146 4.5e-75 285.4 218 62.8
Sed0027030 Sechium edule HOM05D003634 ORTHO05D004146 4.5e-75 285.4 237 60.8
CAN.G212.2 Capsicum annuum HOM05D003634 ORTHO05D004146 5.9e-75 285.0 240 60.0
CAN.G488.26 Capsicum annuum HOM05D003634 ORTHO05D004146 5.9e-75 285.0 212 64.6
TPR.G8779 Trifolium pratense HOM05D003634 ORTHO05D004146 5.9e-75 285.0 215 63.3
Nitab4.5_0000019g0250 Nicotiana tabacum HOM05D003634 ORTHO05D004146 7.6e-75 284.6 215 63.3
Sed0008663 Sechium edule HOM05D003634 ORTHO05D004146 7.6e-75 284.6 253 58.1
Zm00001eb299760 Zea mays HOM05D003634 ORTHO05D004146 7.6e-75 284.6 244 61.1
arahy.Tifrunner.gnm1.ann1.MMUF9T Arachis hypogaea HOM05D003634 ORTHO05D004146 1.3e-74 283.9 217 63.6
Prupe.3G179400 Prunus persica HOM05D003634 ORTHO05D004146 1.3e-74 283.9 269 57.6
TWI14G0595 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 1.3e-74 283.9 217 63.6
Cpa.g.sc187.7 Carica papaya HOM05D003634 ORTHO05D004146 1.7e-74 283.5 222 60.8
AUR62003524 Chenopodium quinoa HOM05D003634 ORTHO05D004146 1.7e-74 283.5 215 63.7
MELO3C016190.2 Cucumis melo HOM05D003634 ORTHO05D004146 1.7e-74 283.5 212 65.6
Lj6g0020294 Lotus japonicus HOM05D003634 ORTHO05D004146 1.7e-74 283.5 217 63.6
PGSC0003DMG400000926 Solanum tuberosum HOM05D003634 ORTHO05D004146 1.7e-74 283.5 235 61.3
Lj8C98T13 Lonicera japonica HOM05D003634 ORTHO05D004146 2.2e-74 283.1 255 56.5
Phvul.006G027801 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 2.2e-74 283.1 217 63.1
vmacro08742 Vaccinium macrocarpon HOM05D003634 ORTHO05D004146 2.2e-74 283.1 212 64.6
VMungo0540G1926 Vigna mungo HOM05D003634 ORTHO05D004146 2.2e-74 283.1 229 62.4
Cfa023023 Carpinus fangiana HOM05D003634 ORTHO05D004146 2.9e-74 282.7 217 63.1
Gorai.011G126200 Gossypium raimondii HOM05D003634 ORTHO05D004146 3.8e-74 282.3 212 64.6
Lsat_1_v5_gn_3_35220 Lactuca sativa HOM05D003634 ORTHO05D004146 3.8e-74 282.3 250 58.8
MD17G1132900 Malus domestica HOM05D003634 ORTHO05D004146 3.8e-74 282.3 225 63.1
Potri.002G055700 Populus trichocarpa HOM05D003634 ORTHO05D004146 3.8e-74 282.3 217 63.6
AUR62017838 Chenopodium quinoa HOM05D003634 ORTHO05D004146 5.0e-74 282.0 215 63.3
Eucgr.A02039 Eucalyptus grandis HOM05D003634 ORTHO05D004146 5.0e-74 282.0 240 58.8
Gohir.D10G114500 Gossypium hirsutum HOM05D003634 ORTHO05D004146 5.0e-74 282.0 212 64.6
Actinidia07505 Actinidia chinensis HOM05D003634 ORTHO05D004146 6.5e-74 281.6 221 62.0
Aqoxy1G01593 Aquilegia oxysepala HOM05D003634 ORTHO05D004146 6.5e-74 281.6 254 59.1
Lalb_Chr04g0249011 Lupinus albus HOM05D003634 ORTHO05D004146 8.5e-74 281.2 216 63.9
QL08p045530 Quercus lobata HOM05D003634 ORTHO05D004146 8.5e-74 281.2 230 60.4
arahy.Tifrunner.gnm1.ann1.1944SK Arachis hypogaea HOM05D003634 ORTHO05D004146 1.1e-73 280.8 214 63.1
Os07g0141400 Oryza sativa ssp. japonica HOM05D003634 ORTHO05D004146 1.1e-73 280.8 238 62.2
Sabra05G0157200 Salix brachista HOM05D003634 ORTHO05D004146 1.1e-73 280.8 217 64.5
Atru.chr6.2016 Acer truncatum HOM05D003634 ORTHO05D004146 1.4e-73 280.4 218 62.8
CSS0028528 Camellia sinensis var. sinensis HOM05D003634 ORTHO05D004146 1.4e-73 280.4 228 60.1
LjContig00049g0021127 Lotus japonicus HOM05D003634 ORTHO05D004146 1.4e-73 280.4 217 61.8
PGR142G4178 Punica granatum HOM05D003634 ORTHO05D004146 1.4e-73 280.4 223 61.4
Zm00001eb117670 Zea mays HOM05D003634 ORTHO05D004146 1.9e-73 280.0 245 60.0
Ciclev10032502m.g Citrus clementina HOM05D003634 ORTHO05D004146 3.2e-73 279.3 249 60.2
Duzib264G1267 Durio zibethinus HOM05D003634 ORTHO05D004146 4.2e-73 278.9 217 63.1
Medtr5g090410 Medicago truncatula HOM05D003634 ORTHO05D004146 4.2e-73 278.9 212 63.2
Potri.005G206700 Populus trichocarpa HOM05D003634 ORTHO05D004146 7.2e-73 278.1 231 60.2
Ca_13941_v3 Cicer arietinum L. HOM05D003634 ORTHO05D004146 9.3e-73 277.7 244 57.8
Glyma.18G114900 Glycine max HOM05D003634 ORTHO05D004146 9.3e-73 277.7 220 61.8
HanXRQChr04g0099261 Helianthus annuus HOM05D003634 ORTHO05D004146 9.3e-73 277.7 213 64.3
HanXRQChr06g0171591 Helianthus annuus HOM05D003634 ORTHO05D004146 9.3e-73 277.7 253 56.9
Psat2g018280 Pisum sativum HOM05D003634 ORTHO05D004146 9.3e-73 277.7 217 62.2
Glyma.14G031800 Glycine max HOM05D003634 ORTHO05D004146 1.2e-72 277.3 245 56.7
MBI02_g35794_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 1.2e-72 277.3 249 59.4
Gohir.A10G151800 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.6e-72 276.9 233 59.7
Lalb_Chr17g0348121 Lupinus albus HOM05D003634 ORTHO05D004146 1.6e-72 276.9 255 57.3
Sabra02G0045200 Salix brachista HOM05D003634 ORTHO05D004146 1.6e-72 276.9 217 60.8
Glyma.02G282500 Glycine max HOM05D003634 ORTHO05D004146 2.1e-72 276.6 241 57.7
PSO675G5089 Papaver somniferum HOM05D003634 ORTHO05D004146 2.1e-72 276.6 241 59.8
THA.LOC104826247 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 2.1e-72 276.6 250 58.0
MSTRG.12265 Avicennia marina HOM05D003634 ORTHO05D004146 2.7e-72 276.2 212 63.7
MBI18_g28201_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 2.7e-72 276.2 230 60.4
Oeu056847.1 Olea europaea HOM05D003634 ORTHO05D004146 2.7e-72 276.2 212 61.8
MSTRG.14106 Avicennia marina HOM05D003634 ORTHO05D004146 3.6e-72 275.8 212 62.7
BcaC07g36796 Brassica carinata HOM05D003634 ORTHO05D004146 4.6e-72 275.4 237 59.1
Hma1.2p1_0571F.1_g180910 Hydrangea macrophylla HOM05D003634 ORTHO05D004146 4.6e-72 275.4 212 62.7
PSO541G1729 Papaver somniferum HOM05D003634 ORTHO05D004146 6.1e-72 275.0 241 59.3
SalBow7G4383 Salvia bowleyana HOM05D003634 ORTHO05D004146 7.9e-72 274.6 227 58.1
unitig_8.g4601 Utricularia gibba HOM05D003634 ORTHO05D004146 7.9e-72 274.6 244 57.0
Aa31LG5G6070 Aethionema arabicum HOM05D003634 ORTHO05D004146 1.3e-71 273.9 282 53.2
ECA246G2888 Erigeron canadensis HOM05D003634 ORTHO05D004146 1.3e-71 273.9 252 56.7
Hund04362 Selenicereus undatus HOM05D003634 ORTHO05D004146 2.3e-71 273.1 269 55.0
SGA_v2.0_scaffold49G18386 Striga asiatica HOM05D003634 ORTHO05D004146 2.3e-71 273.1 256 57.0
Sc07g0004260 Simmondsia chinensis HOM05D003634 ORTHO05D004146 3.0e-71 272.7 244 56.1
THA.LOC104816082 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 3.0e-71 272.7 217 60.8
Medtr3g449930 Medicago truncatula HOM05D003634 ORTHO05D004146 3.9e-71 272.3 212 62.3
Psat5g189160 Pisum sativum HOM05D003634 ORTHO05D004146 3.9e-71 272.3 241 57.3
Oeu012357.1 Olea europaea HOM05D003634 ORTHO05D004146 8.7e-71 271.2 217 59.4
Cc05_g00840 Coffea canephora HOM05D003634 ORTHO05D004146 1.5e-70 270.4 212 61.8
THA.LOC104800813 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 3.3e-70 269.2 212 62.3
ATR0681G398 Amborella trichopoda HOM05D003634 ORTHO05D004146 5.7e-70 268.5 227 60.8
Thecc.01G166600 Theobroma cacao HOM05D003634 ORTHO05D004146 5.7e-70 268.5 217 60.4
unitig_52.g17321 Utricularia gibba HOM05D003634 ORTHO05D004146 5.7e-70 268.5 253 54.9
CDE04G2981 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 2.2e-69 266.5 237 56.1
CDE12G0092 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 1.1e-68 264.2 237 56.1
Lalb_Chr10g0106481 Lupinus albus HOM05D003634 ORTHO05D004146 1.4e-68 263.8 226 60.2
Mapoly0058s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 1.4e-68 263.8 276 55.1
Nitab4.5_0005601g0020 Nicotiana tabacum HOM05D003634 ORTHO05D004146 1.4e-68 263.8 215 61.4
Nitab4.5_0008321g0040 Nicotiana tabacum HOM05D003634 ORTHO05D004146 2.6e-67 259.6 232 58.2
Nitab4.5_0006644g0080 Nicotiana tabacum HOM05D003634 ORTHO05D004146 1.0e-66 257.7 232 58.2
GSVIVG01020818001 Vitis vinifera HOM05D003634 ORTHO05D004146 1.0e-66 257.7 196 62.8
VMungo0647G2531 Vigna mungo HOM05D003634 ORTHO05D004146 3.8e-66 255.8 197 63.5
PGR042G1985 Punica granatum HOM05D003634 ORTHO05D004146 6.5e-66 255.0 230 56.5
arahy.Tifrunner.gnm1.ann1.TCR54Y Arachis hypogaea HOM05D003634 ORTHO05D004146 2.5e-65 253.1 183 65.6
Haze_13608 Corylus avellana HOM05D003634 ORTHO05D004146 2.7e-64 249.6 217 58.5
Migut.M00114 Erythranthe guttata HOM05D003634 ORTHO05D004146 3.6e-64 249.2 183 68.3
Cre12.g550850 Chlamydomonas reinhardtii HOM05D003634 ORTHO05D004146 2.3e-63 246.5 239 55.6
TPR.G14744 Trifolium pratense HOM05D003634 ORTHO05D004146 6.7e-63 245.0 182 64.3
Actinidia12527 Actinidia chinensis HOM05D003634 ORTHO05D004146 6.3e-61 238.4 218 56.0
arahy.Tifrunner.gnm1.ann1.0DED4Z Arachis hypogaea HOM05D003634 ORTHO05D004146 6.9e-60 235.0 191 61.8
MCO12G360 Micromonas commoda HOM05D003634 ORTHO05D004146 9.1e-60 234.6 255 49.0
HPP92_015688 Vanilla planifolia HOM05D003634 ORTHO05D004146 2.7e-56 223.0 238 50.4
CBR_g259 Chara braunii HOM05D003634 ORTHO05D004146 8.2e-53 211.5 275 44.0
Actinidia07504 Actinidia chinensis HOM05D003634 ORTHO05D004146 8.8e-47 191.4 183 53.6
PRCOL_00005580 Prasinoderma coloniale HOM05D003634 ORTHO05D004146 3.3e-46 189.5 191 50.3
AT2G30790 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 4.5e-43 179.1 125 70.4
Nn7g37873 Nelumbo nucifera HOM05D003634 ORTHO05D004146 1.3e-37 161.0 128 61.7
Oeu056845.1 Olea europaea HOM05D003634 ORTHO05D004146 1.3e-37 161.0 125 58.4
PGSC0003DMG400031395 Solanum tuberosum HOM05D003634 ORTHO05D004146 3.8e-34 149.4 109 65.1
AagrBONN_evm.TU.Sc2ySwM_228.465 Anthoceros agrestis HOM05D003634 ORTHO05D004146 1.6e-32 144.1 180 51.7
Dinv20234 Davidia involucrata HOM05D003634 ORTHO05D004146 8.0e-32 141.7 124 54.8
Pp3c11_14700 Physcomitrium patens HOM05D003634 ORTHO05D004146 6.3e-29 132.1 85 76.5
unitig_578.g16007 Utricularia gibba HOM05D003634 ORTHO05D004146 1.2e-24 117.9 98 57.1
Actinidia12528 Actinidia chinensis HOM05D003634 ORTHO05D004146 1.2e-19 101.3 85 60.0
Sp4g13290 Schrenkiella parvula HOM05D003634 ORTHO05D004146 8.3e-13 78.6 54 68.5
PRCOL_00002970 Prasinoderma coloniale HOM05D003634 ORTHO05D004146 1.2e-11 74.7 189 29.6


User provided reference genes

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