Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 0.0e+00 1134.0 550 100.0
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.8e-187 659.8 422 76.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.0e-175 619.8 408 71.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.6e-149 531.9 342 74.0
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 9.9e-138 494.6 368 66.0
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.0e-118 431.4 421 52.0
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.7e-117 424.9 463 49.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.1e-87 327.4 419 40.1
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.3e-78 297.4 413 39.5
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.2e-77 295.0 405 40.0
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 9.8e-77 292.0 411 39.9
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.0e-73 279.6 402 38.6
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 4.6e-42 176.8 425 32.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.9e-41 173.7 376 30.9
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 6.6e-41 172.9 371 30.2
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.8e-39 167.5 340 35.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.0e-37 161.4 366 29.8
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.6e-37 161.0 377 30.0
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.6e-37 161.0 382 30.6
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-37 160.6 376 29.3
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 4.4e-37 160.2 355 29.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.7e-33 148.3 320 30.3
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.5e-32 145.2 330 28.2
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 7.3e-32 142.9 317 30.9
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 2.5e-24 117.9 546 23.6
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.3e-24 117.5 235 31.1
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.3e-24 117.1 362 24.9
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.3e-22 110.2 423 23.6
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.5e-19 101.3 269 30.1
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.0e-17 95.9 248 28.6
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 5.1e-17 93.6 181 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.0e-12 79.3 139 30.9
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.0e-12 79.3 139 30.9
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.7e-12 78.6 329 25.8
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 3.8e-12 77.4 384 24.0
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-11 75.9 340 22.9
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 1.4e-11 75.5 80 47.5
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-11 75.5 122 34.4
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.5e-11 74.7 200 31.0
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 4.2e-11 73.9 59 49.2
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 1.2e-10 72.4 334 24.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.6e-10 72.0 264 26.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 2.1e-10 71.6 334 24.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 4.6e-10 70.5 329 24.6
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 1.8e-09 68.6 333 23.4
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.0e-09 67.8 203 27.6
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 1.5e-08 65.5 339 23.3
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 1.5e-08 65.5 332 24.1
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 1.9e-08 65.1 339 23.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 1.9e-08 65.1 217 25.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 1.9e-08 65.1 217 25.8
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 1.9e-08 65.1 205 25.4
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 2.5e-08 64.7 217 25.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 3.3e-08 64.3 336 23.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 4.3e-08 63.9 216 25.9
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 4.3e-08 63.9 333 23.4
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 4.3e-08 63.9 333 23.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 4.3e-08 63.9 345 23.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 5.7e-08 63.5 333 23.4
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 7.4e-08 63.2 333 23.4
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 7.4e-08 63.2 333 23.4
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 7.4e-08 63.2 197 25.9
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 1.3e-07 62.4 217 25.3
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.3e-07 62.4 217 25.8
Cre04.g212550 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.3e-07 62.4 113 34.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 1.6e-07 62.0 342 22.2
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.6e-07 62.0 209 23.9
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.6e-07 62.0 329 23.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 2.8e-07 61.2 217 25.8
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.7e-07 60.8 217 25.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 3.7e-07 60.8 218 24.8
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 3.7e-07 60.8 221 24.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 4.8e-07 60.5 217 25.8
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 4.8e-07 60.5 336 22.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 6.3e-07 60.1 212 25.0
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 6.3e-07 60.1 213 24.9
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 8.2e-07 59.7 207 27.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 8.2e-07 59.7 222 24.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 1.1e-06 59.3 200 24.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.4e-06 58.9 217 24.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 1.4e-06 58.9 217 24.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 1.4e-06 58.9 221 24.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 1.4e-06 58.9 217 24.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 1.4e-06 58.9 217 25.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 1.8e-06 58.5 202 25.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 1.8e-06 58.5 217 24.9
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 1.8e-06 58.5 202 25.2
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 1.8e-06 58.5 221 24.4
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 3.1e-06 57.8 213 23.9
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.1e-06 57.8 202 24.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 3.1e-06 57.8 213 25.4
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 4.1e-06 57.4 217 23.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 4.1e-06 57.4 217 24.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 4.1e-06 57.4 216 24.5
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 5.3e-06 57.0 213 24.4
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.3e-06 57.0 325 21.8
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 5.3e-06 57.0 213 23.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 5.3e-06 57.0 202 25.7
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 5.3e-06 57.0 213 23.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 6.9e-06 56.6 213 23.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 9.0e-06 56.2 216 24.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 9.0e-06 56.2 211 24.6
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 9.0e-06 56.2 218 24.8
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 9.0e-06 56.2 217 23.0


User provided reference genes

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